Literature DB >> 29551290

Structure of the Mitochondrial Aminolevulinic Acid Synthase, a Key Heme Biosynthetic Enzyme.

Breann L Brown1, Julia R Kardon2, Robert T Sauer1, Tania A Baker3.   

Abstract

5-Aminolevulinic acid synthase (ALAS) catalyzes the first step in heme biosynthesis. We present the crystal structure of a eukaryotic ALAS from Saccharomyces cerevisiae. In this homodimeric structure, one ALAS subunit contains covalently bound cofactor, pyridoxal 5'-phosphate (PLP), whereas the second is PLP free. Comparison between the subunits reveals PLP-coupled reordering of the active site and of additional regions to achieve the active conformation of the enzyme. The eukaryotic C-terminal extension, a region altered in multiple human disease alleles, wraps around the dimer and contacts active-site-proximal residues. Mutational analysis demonstrates that this C-terminal region that engages the active site is important for ALAS activity. Our discovery of structural elements that change conformation upon PLP binding and of direct contact between the C-terminal extension and the active site thus provides a structural basis for investigation of disruptions in the first step of heme biosynthesis and resulting human disorders.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  AAA+ unfoldase; ClpX; XLPP; XLSA; porphyria; sideroblastic anemia; α-oxoamine family

Mesh:

Substances:

Year:  2018        PMID: 29551290      PMCID: PMC5894356          DOI: 10.1016/j.str.2018.02.012

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  36 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  A Japanese family with X-linked sideroblastic anemia affecting females and manifesting as macrocytic anemia.

Authors:  Tatsuya Katsurada; Hiroshi Kawabata; Daiki Kawabata; Masahiro Kawahara; Yukiharu Nakabo; Akifumi Takaori-Kondo; Yataro Yoshida
Journal:  Int J Hematol       Date:  2016-02-10       Impact factor: 2.490

3.  Enzymatic defect in "X-linked" sideroblastic anemia: molecular evidence for erythroid delta-aminolevulinate synthase deficiency.

Authors:  P D Cotter; M Baumann; D F Bishop
Journal:  Proc Natl Acad Sci U S A       Date:  1992-05-01       Impact factor: 11.205

4.  C-terminal deletions in the ALAS2 gene lead to gain of function and cause X-linked dominant protoporphyria without anemia or iron overload.

Authors:  Sharon D Whatley; Sarah Ducamp; Laurent Gouya; Bernard Grandchamp; Carole Beaumont; Michael N Badminton; George H Elder; S Alexander Holme; Alexander V Anstey; Michelle Parker; Anne V Corrigall; Peter N Meissner; Richard J Hift; Joanne T Marsden; Yun Ma; Giorgina Mieli-Vergani; Jean-Charles Deybach; Hervé Puy
Journal:  Am J Hum Genet       Date:  2008-09-04       Impact factor: 11.025

5.  Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability.

Authors:  F-Nora Vögtle; Stefanie Wortelkamp; René P Zahedi; Dorothea Becker; Claudia Leidhold; Kris Gevaert; Josef Kellermann; Wolfgang Voos; Albert Sickmann; Nikolaus Pfanner; Chris Meisinger
Journal:  Cell       Date:  2009-10-16       Impact factor: 41.582

6.  A continuous spectrophotometric assay for 5-aminolevulinate synthase that utilizes substrate cycling.

Authors:  G A Hunter; G C Ferreira
Journal:  Anal Biochem       Date:  1995-04-10       Impact factor: 3.365

7.  Mutations at a glycine loop in aminolevulinate synthase affect pyridoxal phosphate cofactor binding and catalysis.

Authors:  J Gong; C J Kay; M J Barber; G C Ferreira
Journal:  Biochemistry       Date:  1996-11-12       Impact factor: 3.162

8.  Purification and structure of rat erythroid-specific delta-aminolevulinate synthase.

Authors:  H Munakata; T Yamagami; T Nagai; M Yamamoto; N Hayashi
Journal:  J Biochem       Date:  1993-07       Impact factor: 3.387

9.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

10.  Systematic molecular genetic analysis of congenital sideroblastic anemia: evidence for genetic heterogeneity and identification of novel mutations.

Authors:  Anke K Bergmann; Dean R Campagna; Erin M McLoughlin; Suneet Agarwal; Mark D Fleming; Sylvia S Bottomley; Ellis J Neufeld
Journal:  Pediatr Blood Cancer       Date:  2010-02       Impact factor: 3.167

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  15 in total

Review 1.  5-Aminolevulinate synthase catalysis: The catcher in heme biosynthesis.

Authors:  Bosko M Stojanovski; Gregory A Hunter; Insung Na; Vladimir N Uversky; Rays H Y Jiang; Gloria C Ferreira
Journal:  Mol Genet Metab       Date:  2019-06-13       Impact factor: 4.797

Review 2.  Nutritional immunity: the impact of metals on lung immune cells and the airway microbiome during chronic respiratory disease.

Authors:  Claire Healy; Natalia Munoz-Wolf; Janné Strydom; Lynne Faherty; Niamh C Williams; Sarah Kenny; Seamas C Donnelly; Suzanne M Cloonan
Journal:  Respir Res       Date:  2021-04-29

Review 3.  Regulation of Heme Synthesis by Mitochondrial Homeostasis Proteins.

Authors:  Yvette Y Yien; Mark Perfetto
Journal:  Front Cell Dev Biol       Date:  2022-06-27

Review 4.  Recent advances on porphyria genetics: Inheritance, penetrance & molecular heterogeneity, including new modifying/causative genes.

Authors:  Makiko Yasuda; Brenden Chen; Robert J Desnick
Journal:  Mol Genet Metab       Date:  2018-11-30       Impact factor: 4.797

Review 5.  The molecular genetics of sideroblastic anemia.

Authors:  Sarah Ducamp; Mark D Fleming
Journal:  Blood       Date:  2018-11-06       Impact factor: 25.476

6.  Human aminolevulinate synthase structure reveals a eukaryotic-specific autoinhibitory loop regulating substrate binding and product release.

Authors:  Henry J Bailey; Gustavo A Bezerra; Jason R Marcero; Siladitya Padhi; William R Foster; Elzbieta Rembeza; Arijit Roy; David F Bishop; Robert J Desnick; Gopalakrishnan Bulusu; Harry A Dailey; Wyatt W Yue
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

7.  Anti-Correlation between the Dynamics of the Active Site Loop and C-Terminal Tail in Relation to the Homodimer Asymmetry of the Mouse Erythroid 5-Aminolevulinate Synthase.

Authors:  Insung Na; Dominique Catena; Min J Kong; Gloria C Ferreira; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2018-06-28       Impact factor: 5.923

8.  Molecular expression, characterization and mechanism of ALAS2 gain-of-function mutants.

Authors:  Vassili Tchaikovskii; Robert J Desnick; David F Bishop
Journal:  Mol Med       Date:  2019-01-24       Impact factor: 6.354

9.  Heme-dependent Inactivation of 5-Aminolevulinate Synthase from Caulobacter crescentus.

Authors:  Hiroko Ikushiro; Atsushi Nagami; Tomoko Takai; Taiki Sawai; Yuki Shimeno; Hiroshi Hori; Ikuko Miyahara; Nobuo Kamiya; Takato Yano
Journal:  Sci Rep       Date:  2018-09-21       Impact factor: 4.379

10.  Mitochondrial ClpX activates an essential biosynthetic enzyme through partial unfolding.

Authors:  Julia R Kardon; Jamie A Moroco; John R Engen; Tania A Baker
Journal:  Elife       Date:  2020-02-24       Impact factor: 8.140

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