Literature DB >> 29528265

Current progress of immunoinformatics approach harnessed for cellular- and antibody-dependent vaccine design.

Ada Kazi1,2, Candy Chuah3, Abu Bakar Abdul Majeed4, Chiuan Herng Leow5, Boon Huat Lim2, Chiuan Yee Leow1.   

Abstract

Immunoinformatics plays a pivotal role in vaccine design, immunodiagnostic development, and antibody production. In the past, antibody design and vaccine development depended exclusively on immunological experiments which are relatively expensive and time-consuming. However, recent advances in the field of immunological bioinformatics have provided feasible tools which can be used to lessen the time and cost required for vaccine and antibody development. This approach allows the selection of immunogenic regions from the pathogen genomes. The ideal regions could be developed as potential vaccine candidates to trigger protective immune responses in the hosts. At present, epitope-based vaccines are attractive concepts which have been successfully trailed to develop vaccines which target rapidly mutating pathogens. In this article, we provide an overview of the current progress of immunoinformatics and their applications in the vaccine design, immune system modeling and therapeutics.

Keywords:  Antigen; bioinformatics; epitope prediction; human leukocyte antigen (HLA); immunoinformatics; in silico tools; major histocompability (MHC); reverse vaccinology; vaccine design

Mesh:

Substances:

Year:  2018        PMID: 29528265      PMCID: PMC6056828          DOI: 10.1080/20477724.2018.1446773

Source DB:  PubMed          Journal:  Pathog Glob Health        ISSN: 2047-7724            Impact factor:   2.894


  71 in total

1.  Prediction of promiscuous and high-affinity mutated MHC binders.

Authors:  Manoj Bhasin; G P S Raghava
Journal:  Hybrid Hybridomics       Date:  2003-08

2.  Efficient peptide-MHC-I binding prediction for alleles with few known binders.

Authors:  Laurent Jacob; Jean-Philippe Vert
Journal:  Bioinformatics       Date:  2007-12-14       Impact factor: 6.937

3.  Predicting flexible length linear B-cell epitopes.

Authors:  Yasser El-Manzalawy; Drena Dobbs; Vasant Honavar
Journal:  Comput Syst Bioinformatics Conf       Date:  2008

4.  A simple reference state makes a significant improvement in near-native selections from structurally refined docking decoys.

Authors:  Shide Liang; Song Liu; Chi Zhang; Yaoqi Zhou
Journal:  Proteins       Date:  2007-11-01

5.  EpiToolKit--a web-based workbench for vaccine design.

Authors:  Benjamin Schubert; Hans-Philipp Brachvogel; Christopher Jürges; Oliver Kohlbacher
Journal:  Bioinformatics       Date:  2015-02-20       Impact factor: 6.937

6.  BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes.

Authors:  Martin Closter Jespersen; Bjoern Peters; Morten Nielsen; Paolo Marcatili
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 16.971

7.  Predicting linear B-cell epitopes using string kernels.

Authors:  Yasser El-Manzalawy; Drena Dobbs; Vasant Honavar
Journal:  J Mol Recognit       Date:  2008 Jul-Aug       Impact factor: 2.137

8.  SVMTriP: a method to predict antigenic epitopes using support vector machine to integrate tri-peptide similarity and propensity.

Authors:  Bo Yao; Lin Zhang; Shide Liang; Chi Zhang
Journal:  PLoS One       Date:  2012-09-12       Impact factor: 3.240

9.  Reliable B cell epitope predictions: impacts of method development and improved benchmarking.

Authors:  Jens Vindahl Kringelum; Claus Lundegaard; Ole Lund; Morten Nielsen
Journal:  PLoS Comput Biol       Date:  2012-12-27       Impact factor: 4.475

10.  Genome-wide prediction of vaccine targets for human herpes simplex viruses using Vaxign reverse vaccinology.

Authors:  Zuoshuang Xiang; Yongqun He
Journal:  BMC Bioinformatics       Date:  2013-03-08       Impact factor: 3.169

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  22 in total

1.  Antigenic properties of dense granule antigen 12 protein using bioinformatics tools in order to improve vaccine design against Toxoplasma gondii.

Authors:  Ali Dalir Ghaffari; Abdolhossein Dalimi; Fatemeh Ghaffarifar; Majid Pirestani
Journal:  Clin Exp Vaccine Res       Date:  2020-07-31

2.  A cutting-edge immunoinformatics approach for design of multi-epitope oral vaccine against dreadful human malaria.

Authors:  Manisha Pritam; Garima Singh; Suchit Swaroop; Akhilesh Kumar Singh; Brijesh Pandey; Satarudra Prakash Singh
Journal:  Int J Biol Macromol       Date:  2020-04-29       Impact factor: 6.953

3.  In silico analysis and expression of a new chimeric antigen as a vaccine candidate against cutaneous leishmaniasis.

Authors:  Leila Motamedpour; Abdolhossein Dalimi; Majid Pirestani; Fatemeh Ghaffarifar
Journal:  Iran J Basic Med Sci       Date:  2020-11       Impact factor: 2.699

4.  Computational-Driven Epitope Verification and Affinity Maturation of TLR4-Targeting Antibodies.

Authors:  Bilal Ahmad; Maria Batool; Moon-Suk Kim; Sangdun Choi
Journal:  Int J Mol Sci       Date:  2021-06-01       Impact factor: 5.923

5.  Immunoinformatics and molecular dynamics approaches: Next generation vaccine design against West Nile virus.

Authors:  Md Tahsin Khan; Rahatul Islam; Tarhima Jahan Jerin; Araf Mahmud; Sahara Khatun; Ahasanul Kobir; Md Nahidul Islam; Arzuba Akter; Shakhinur Islam Mondal
Journal:  PLoS One       Date:  2021-06-17       Impact factor: 3.240

6.  Designing Multi-Epitope Vaccines to Combat Emerging Coronavirus Disease 2019 (COVID-19) by Employing Immuno-Informatics Approach.

Authors:  Anam Naz; Fatima Shahid; Tariq Tahir Butt; Faryal Mehwish Awan; Amjad Ali; Arif Malik
Journal:  Front Immunol       Date:  2020-07-10       Impact factor: 7.561

7.  Exploring NS3/4A, NS5A and NS5B proteins to design conserved subunit multi-epitope vaccine against HCV utilizing immunoinformatics approaches.

Authors:  Aqsa Ikram; Tahreem Zaheer; Faryal Mehwish Awan; Ayesha Obaid; Anam Naz; Rumeza Hanif; Rehan Zafar Paracha; Amjad Ali; Abdul Khaliq Naveed; Hussnain Ahmed Janjua
Journal:  Sci Rep       Date:  2018-10-31       Impact factor: 4.379

8.  Epitope-Based Peptide Vaccine against Glycoprotein G of Nipah Henipavirus Using Immunoinformatics Approaches.

Authors:  Arwa A Mohammed; Shaza W Shantier; Mujahed I Mustafa; Hind K Osman; Hashim E Elmansi; Isam-Aldin A Osman; Rawan A Mohammed; Fatima A Abdelrhman; Mihad E Elnnewery; Einas M Yousif; Marwa M Mustafa; Nafisa M Elfadol; Alaa I Abdalla; Eiman Mahmoud; Ahmed A Yagaub; Yassir A Ahmed; Mohamed A Hassan
Journal:  J Immunol Res       Date:  2020-04-22       Impact factor: 4.818

9.  Reverse vaccinology approach for the identification and characterization of outer membrane proteins of Shigella flexneri as potential cellular- and antibody-dependent vaccine candidates.

Authors:  Chiuan Yee Leow; Ada Kazi; Che Muhammad Khairul Hisyam Ismail; Candy Chuah; Boon Huat Lim; Chiuan Herng Leow; Kirnpal Kaur Banga Singh
Journal:  Clin Exp Vaccine Res       Date:  2020-01-31

Review 10.  Systems Biology Approaches for Therapeutics Development Against COVID-19.

Authors:  Shweta Jaiswal; Mohit Kumar; Yogendra Singh; Pratyoosh Shukla
Journal:  Front Cell Infect Microbiol       Date:  2020-10-28       Impact factor: 5.293

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