Literature DB >> 29521394

L-edge sum rule analysis on 3d transition metal sites: from d10 to d0 and towards application to extremely dilute metallo-enzymes.

Hongxin Wang1, Stephan Friedrich2, Lei Li3, Ziliang Mao4, Pinghua Ge5, Mahalingam Balasubramanian6, Daulat S Patil7.   

Abstract

According to L-edge sum rules, the number of 3d vacancies at a transition metal site is directly proportional to the integrated intensity of the L-edge X-ray absorption spectrum (XAS) for the corresponding metal complex. In this study, the numbers of 3d holes are characterized quantitatively or semi-quantitatively for a series of manganese (Mn) and nickel (Ni) complexes, including the electron configurations 3d10→ 3d0. In addition, extremely dilute (<0.1% wt/wt) Ni enzymes were examined by two different approaches: (1) by using a high resolution superconducting tunnel junction X-ray detector to obtain XAS spectra with a very high signal-to-noise ratio, especially in the non-variant edge jump region; and (2) by adding an inert tracer to the sample that provides a prominent spectral feature to replace the weak edge jump for intensity normalization. In this publication, we present for the first time: (1) L-edge sum rule analysis for a series of Mn and Ni complexes that include electron configurations from an open shell 3d0 to a closed shell 3d10; (2) a systematic analysis on the uncertainties, especially on that from the edge jump, which was missing in all previous reports; (3) a clearly-resolved edge jump between pre-L3 and post-L2 regions from an extremely dilute sample; (4) an evaluation of an alternative normalization standard for L-edge sum rule analysis. XAS from two copper (Cu) proteins measured using a conventional semiconductor X-ray detector are also repeated as bridges between Ni complexes and dilute Ni enzymes. The differences between measuring 1% Cu enzymes and measuring <0.1% Ni enzymes are compared and discussed. This study extends L-edge sum rule analysis to virtually any 3d metal complex and any dilute biological samples that contain 3d metals.

Entities:  

Year:  2018        PMID: 29521394      PMCID: PMC5895852          DOI: 10.1039/c7cp06624d

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  17 in total

1.  A Homoleptic Thioether Coordination Sphere That Supports Nickel(I).

Authors:  Pinghua Ge; Charles G. Riordan; Glenn P. A. Yap; Arnold L. Rheingold
Journal:  Inorg Chem       Date:  1996-09-11       Impact factor: 5.165

2.  X-ray circular dichroism and local magnetic fields.

Authors: 
Journal:  Phys Rev Lett       Date:  1993-02-01       Impact factor: 9.161

3.  A quantitative description of the ground-state wave function of Cu(A) by X-ray absorption spectroscopy: comparison to plastocyanin and relevance to electron transfer.

Authors:  S DeBeer George; M Metz; R K Szilagyi; H Wang; S P Cramer; Y Lu; W B Tolman; B Hedman; K O Hodgson; E I Solomon
Journal:  J Am Chem Soc       Date:  2001-06-20       Impact factor: 15.419

4.  Fermentation of glucose, fructose, and xylose by Clostridium thermoaceticum: effect of metals on growth yield, enzymes, and the synthesis of acetate from CO 2 .

Authors:  J R Andreesen; A Schaupp; C Neurauter; A Brown; L G Ljungdahl
Journal:  J Bacteriol       Date:  1973-05       Impact factor: 3.490

5.  Nickel-iron-selenium hydrogenase.

Authors:  D S Patil
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

Review 6.  Nickel hydrogenases: in search of the active site.

Authors:  S P Albracht
Journal:  Biochim Biophys Acta       Date:  1994-12-30

7.  Extended X-ray absorption fine structure and multiple-scattering simulation of nickel dithiolene complexes Ni[S2C2(CF3)2]2(n) (n = -2, -1, 0) and an olefin adduct Ni[S2C2(CF3)2]2(1-hexene).

Authors:  Weiwei Gu; Hongxin Wang; Kun Wang
Journal:  J Synchrotron Radiat       Date:  2015-01-01       Impact factor: 2.616

8.  EPR studies with 77Se-enriched (NiFeSe) hydrogenase of Desulfovibrio baculatus. Evidence for a selenium ligand to the active site nickel.

Authors:  S H He; M Teixeira; J LeGall; D S Patil; I Moura; J J Moura; D V DerVartanian; B H Huynh; H D Peck
Journal:  J Biol Chem       Date:  1989-02-15       Impact factor: 5.157

9.  Spectroscopic investigation of stellacyanin mutants: axial ligand interactions at the blue copper site.

Authors:  Serena DeBeer George; Lipika Basumallick; Robert K Szilagyi; David W Randall; Michael G Hill; Aram M Nersissian; Joan S Valentine; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2003-09-17       Impact factor: 15.419

10.  Construction and characterization of an azurin analog for the purple copper site in cytochrome c oxidase.

Authors:  M Hay; J H Richards; Y Lu
Journal:  Proc Natl Acad Sci U S A       Date:  1996-01-09       Impact factor: 11.205

View more
  1 in total

1.  Demonstration of Near Edge X-ray Absorption Fine Structure Spectroscopy of Transition Metals Using Xe/He Double Stream Gas Puff Target Soft X-ray Source.

Authors:  Tomasz Fok; Przemysław Wachulak; Łukasz Węgrzyński; Andrzej Bartnik; Michał Nowak; Piotr Nyga; Jerzy Kostecki; Barbara Nasiłowska; Wojciech Skrzeczanowski; Rafał Pietruszka; Karol Janulewicz; Henryk Fiedorowicz
Journal:  Materials (Basel)       Date:  2021-11-30       Impact factor: 3.623

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.