Literature DB >> 29520680

[Relevance of big data for molecular diagnostics].

M Bonin-Andresen1, B Smiljanovic1, B Stuhlmüller1, T Sörensen1, A Grützkau2, T Häupl3.   

Abstract

Big data analysis raises the expectation that computerized algorithms may extract new knowledge from otherwise unmanageable vast data sets. What are the algorithms behind the big data discussion? In principle, high throughput technologies in molecular research already introduced big data and the development and application of analysis tools into the field of rheumatology some 15 years ago. This includes especially omics technologies, such as genomics, transcriptomics and cytomics. Some basic methods of data analysis are provided along with the technology, however, functional analysis and interpretation requires adaptation of existing or development of new software tools. For these steps, structuring and evaluating according to the biological context is extremely important and not only a mathematical problem. This aspect has to be considered much more for molecular big data than for those analyzed in health economy or epidemiology. Molecular data are structured in a first order determined by the applied technology and present quantitative characteristics that follow the principles of their biological nature. These biological dependencies have to be integrated into software solutions, which may require networks of molecular big data of the same or even different technologies in order to achieve cross-technology confirmation. More and more extensive recording of molecular processes also in individual patients are generating personal big data and require new strategies for management in order to develop data-driven individualized interpretation concepts. With this perspective in mind, translation of information derived from molecular big data will also require new specifications for education and professional competence.

Entities:  

Keywords:  Bioinformatics; Data analysis; Data networks; Molecular medicine; Omics technologies

Mesh:

Year:  2018        PMID: 29520680     DOI: 10.1007/s00393-018-0436-3

Source DB:  PubMed          Journal:  Z Rheumatol        ISSN: 0340-1855            Impact factor:   1.372


  9 in total

1.  Defining TNF-α- and LPS-induced gene signatures in monocytes to unravel the complexity of peripheral blood transcriptomes in health and disease.

Authors:  Biljana Smiljanovic; Joachim R Grün; Marta Steinbrich-Zöllner; Bruno Stuhlmüller; Thomas Häupl; Gerd R Burmester; Andreas Radbruch; Andreas Grützkau; Ria Baumgrass
Journal:  J Mol Med (Berl)       Date:  2010-07-17       Impact factor: 4.599

2.  immunoClust--An automated analysis pipeline for the identification of immunophenotypic signatures in high-dimensional cytometric datasets.

Authors:  Till Sörensen; Sabine Baumgart; Pawel Durek; Andreas Grützkau; Thomas Häupl
Journal:  Cytometry A       Date:  2015-04-07       Impact factor: 4.355

3.  The Gene Expression Omnibus Database.

Authors:  Emily Clough; Tanya Barrett
Journal:  Methods Mol Biol       Date:  2016

4.  The multifaceted balance of TNF-α and type I/II interferon responses in SLE and RA: how monocytes manage the impact of cytokines.

Authors:  Biljana Smiljanovic; Joachim R Grün; Robert Biesen; Ursula Schulte-Wrede; Ria Baumgrass; Bruno Stuhlmüller; Wlodzimierz Maslinski; Falk Hiepe; Gerd-R Burmester; Andreas Radbruch; Thomas Häupl; Andreas Grützkau
Journal:  J Mol Med (Berl)       Date:  2012-05-19       Impact factor: 4.599

5.  Type I interferon as a biomarker in autoimmunity and viral infection: a leukocyte subset-specific analysis unveils hidden diagnostic options.

Authors:  Romy Strauß; Thomas Rose; Shaun M Flint; Jens Klotsche; Thomas Häupl; Markus Peck-Radosavljevic; Taketoshi Yoshida; Chieko Kyogoku; Alexandra Flechsig; Amy M Becker; Kathryn H Dao; Andreas Radbruch; Gerd-Rüdiger Burmester; Paul A Lyons; Laurie S Davis; Falk Hiepe; Andreas Grützkau; Robert Biesen
Journal:  J Mol Med (Berl)       Date:  2017-03-29       Impact factor: 4.599

6.  Identification of known and novel genes in activated monocytes from patients with rheumatoid arthritis.

Authors:  B Stuhlmüller; U Ungethüm; S Scholze; L Martinez; M Backhaus; H G Kraetsch; R W Kinne; G R Burmester
Journal:  Arthritis Rheum       Date:  2000-04

7.  Genomic stratification by expression of HLA-DRB4 alleles identifies differential innate and adaptive immune transcriptional patterns - A strategy to detect predictors of methotrexate response in early rheumatoid arthritis.

Authors:  Bruno Stuhlmüller; Karsten Mans; Neeraj Tandon; Marc O Bonin; Biljana Smiljanovic; Till A Sörensen; Pascal Schendel; Peter Martus; Joachim Listing; Jacqueline Detert; Marina Backhaus; Thomas Neumann; Robert J Winchester; Gerd-R Burmester; Thomas Häupl
Journal:  Clin Immunol       Date:  2016-08-26       Impact factor: 3.969

8.  CD11c as a transcriptional biomarker to predict response to anti-TNF monotherapy with adalimumab in patients with rheumatoid arthritis.

Authors:  B Stuhlmüller; T Häupl; M M Hernandez; A Grützkau; R-J Kuban; N Tandon; J W Voss; J Salfeld; R W Kinne; G R Burmester
Journal:  Clin Pharmacol Ther       Date:  2009-12-23       Impact factor: 6.875

9.  Monocyte alterations in rheumatoid arthritis are dominated by preterm release from bone marrow and prominent triggering in the joint.

Authors:  Biljana Smiljanovic; Anna Radzikowska; Ewa Kuca-Warnawin; Weronika Kurowska; Joachim R Grün; Bruno Stuhlmüller; Marc Bonin; Ursula Schulte-Wrede; Till Sörensen; Chieko Kyogoku; Anne Bruns; Sandra Hermann; Sarah Ohrndorf; Karlfried Aupperle; Marina Backhaus; Gerd R Burmester; Andreas Radbruch; Andreas Grützkau; Wlodzimierz Maslinski; Thomas Häupl
Journal:  Ann Rheum Dis       Date:  2017-11-30       Impact factor: 19.103

  9 in total
  3 in total

1.  Insights into the Transcriptional Reprogramming in Tomato Response to PSTVd Variants Using Network Approaches.

Authors:  Katia Aviña-Padilla; Octavio Zambada-Moreno; Gabriel Emilio Herrera-Oropeza; Marco A Jimenez-Limas; Peter Abrahamian; Rosemarie W Hammond; Maribel Hernández-Rosales
Journal:  Int J Mol Sci       Date:  2022-05-26       Impact factor: 6.208

Review 2.  [Biomarkers and imaging for diagnosis and stratification of rheumatoid arthritis and spondylarthritis in the BMBF consortium ArthroMark].

Authors:  T Häupl; A Skapenko; B Hoppe; K Skriner; H Burkhardt; D Poddubnyy; S Ohrndorf; P Sewerin; U Mansmann; B Stuhlmüller; H Schulze-Koops; G-R Burmester
Journal:  Z Rheumatol       Date:  2018-05       Impact factor: 1.372

3.  Rheumatology 4.0: big data, wearables and diagnosis by computer.

Authors:  Gerd R Burmester
Journal:  Ann Rheum Dis       Date:  2018-05-25       Impact factor: 19.103

  3 in total

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