Literature DB >> 29518522

New insights into RAS biology reinvigorate interest in mathematical modeling of RAS signaling.

Keesha E Erickson1, Oleksii S Rukhlenko2, Richard G Posner3, William S Hlavacek4, Boris N Kholodenko5.   

Abstract

RAS is the most frequently mutated gene across human cancers, but developing inhibitors of mutant RAS has proven to be challenging. Given the difficulties of targeting RAS directly, drugs that impact the other components of pathways where mutant RAS operates may potentially be effective. However, the system-level features, including different localizations of RAS isoforms, competition between downstream effectors, and interlocking feedback and feed-forward loops, must be understood to fully grasp the opportunities and limitations of inhibiting specific targets. Mathematical modeling can help us discern the system-level impacts of these features in normal and cancer cells. New technologies enable the acquisition of experimental data that will facilitate development of realistic models of oncogenic RAS behavior. In light of the wealth of empirical data accumulated over decades of study and the advancement of experimental methods for gathering new data, modelers now have the opportunity to advance progress toward realization of targeted treatment for mutant RAS-driven cancers.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  ERK cascade; Mathematical modeling; Mechanistic modeling; RAS; Systems biology

Mesh:

Substances:

Year:  2018        PMID: 29518522      PMCID: PMC6123307          DOI: 10.1016/j.semcancer.2018.02.008

Source DB:  PubMed          Journal:  Semin Cancer Biol        ISSN: 1044-579X            Impact factor:   15.707


  176 in total

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2.  Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): a phase 3, open-label, randomised controlled trial.

Authors:  Yung-Jue Bang; Eric Van Cutsem; Andrea Feyereislova; Hyun C Chung; Lin Shen; Akira Sawaki; Florian Lordick; Atsushi Ohtsu; Yasushi Omuro; Taroh Satoh; Giuseppe Aprile; Evgeny Kulikov; Julie Hill; Michaela Lehle; Josef Rüschoff; Yoon-Koo Kang
Journal:  Lancet       Date:  2010-08-19       Impact factor: 79.321

Review 3.  Observing biological dynamics at atomic resolution using NMR.

Authors:  Anthony K Mittermaier; Lewis E Kay
Journal:  Trends Biochem Sci       Date:  2009-10-19       Impact factor: 13.807

4.  Nonlinear signalling networks and cell-to-cell variability transform external signals into broadly distributed or bimodal responses.

Authors:  Maciej Dobrzyński; Lan K Nguyen; Marc R Birtwistle; Alexander von Kriegsheim; Alfonso Blanco Fernández; Alex Cheong; Walter Kolch; Boris N Kholodenko
Journal:  J R Soc Interface       Date:  2014-09-06       Impact factor: 4.118

5.  Signal processing at the Ras circuit: what shapes Ras activation patterns?

Authors:  N I Markevich; G Moehren; O V Demin; A Kiyatkin; J B Hoek; B N Kholodenko
Journal:  Syst Biol (Stevenage)       Date:  2004-06

6.  Functional specificity of ras isoforms: so similar but so different.

Authors:  Esther Castellano; Eugenio Santos
Journal:  Genes Cancer       Date:  2011-03

7.  SPRY2 is an inhibitor of the ras/extracellular signal-regulated kinase pathway in melanocytes and melanoma cells with wild-type BRAF but not with the V599E mutant.

Authors:  Dimitra Tsavachidou; Mathew L Coleman; Galene Athanasiadis; Shuixing Li; Jonathan D Licht; Michael F Olson; Barbara L Weber
Journal:  Cancer Res       Date:  2004-08-15       Impact factor: 12.701

8.  A genetically encoded fluorescent sensor of ERK activity.

Authors:  Christopher D Harvey; Anka G Ehrhardt; Cristina Cellurale; Haining Zhong; Ryohei Yasuda; Roger J Davis; Karel Svoboda
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-25       Impact factor: 11.205

9.  Elevated CRAF as a potential mechanism of acquired resistance to BRAF inhibition in melanoma.

Authors:  Clara Montagut; Sreenath V Sharma; Toshi Shioda; Ultan McDermott; Matthew Ulman; Lindsey E Ulkus; Dora Dias-Santagata; Hannah Stubbs; Diana Y Lee; Anurag Singh; Lisa Drew; Daniel A Haber; Jeffrey Settleman
Journal:  Cancer Res       Date:  2008-06-15       Impact factor: 12.701

10.  Reversible intracellular translocation of KRas but not HRas in hippocampal neurons regulated by Ca2+/calmodulin.

Authors:  Marc Fivaz; Tobias Meyer
Journal:  J Cell Biol       Date:  2005-07-25       Impact factor: 10.539

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  6 in total

1.  Regulation of the Small GTPase Ras and Its Relevance to Human Disease.

Authors:  Kayla R Kulhanek; Jeroen P Roose; Ignacio Rubio
Journal:  Methods Mol Biol       Date:  2021

2.  Optogenetic actuator - ERK biosensor circuits identify MAPK network nodes that shape ERK dynamics.

Authors:  Coralie Dessauges; Jan Mikelson; Maciej Dobrzyński; Marc-Antoine Jacques; Agne Frismantiene; Paolo Armando Gagliardi; Mustafa Khammash; Olivier Pertz
Journal:  Mol Syst Biol       Date:  2022-06       Impact factor: 13.068

3.  Biomarker Value of miR-221 and miR-222 as Potential Substrates in the Differential Diagnosis of Papillary Thyroid Cancer Based on Data Synthesis and Bioinformatics Approach.

Authors:  Shang Cai; Jiayan Ma; Yong Wang; Yuxing Cai; Liwei Xie; Xiangying Chen; Yingying Yang; Qiliang Peng
Journal:  Front Endocrinol (Lausanne)       Date:  2022-02-07       Impact factor: 5.555

4.  Adagrasib, a KRAS G12C inhibitor, reverses the multidrug resistance mediated by ABCB1 in vitro and in vivo.

Authors:  Yuchen Zhang; Cheukfai Li; Chenglai Xia; Keneth Kin Wah To; Zhixing Guo; Chongyang Ren; Lingzhu Wen; Fang Wang; Liwu Fu; Ning Liao
Journal:  Cell Commun Signal       Date:  2022-09-14       Impact factor: 7.525

Review 5.  The Role of the Guanosine Nucleotide-Binding Protein in the Corpus Luteum.

Authors:  Dody Houston Billhaq; Seunghyung Lee
Journal:  Animals (Basel)       Date:  2021-05-24       Impact factor: 2.752

Review 6.  Can Systems Biology Advance Clinical Precision Oncology?

Authors:  Andrea Rocca; Boris N Kholodenko
Journal:  Cancers (Basel)       Date:  2021-12-16       Impact factor: 6.575

  6 in total

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