Literature DB >> 29516480

BioID: A Screen for Protein-Protein Interactions.

Kyle J Roux1,2, Dae In Kim1, Brian Burke3, Danielle G May1.   

Abstract

BioID is a unique method to screen for physiologically relevant protein interactions that occur in living cells. This technique harnesses a promiscuous biotin ligase to biotinylate proteins based on proximity. The ligase is fused to a protein of interest and expressed in cells, where it biotinylates proximal endogenous proteins. Because it is a rare protein modification in nature, biotinylation of these endogenous proteins by BioID fusion proteins enables their selective isolation and identification with standard biotin-affinity capture. Proteins identified by BioID are candidate interactors for the protein of interest. BioID can be applied to insoluble proteins, can identify weak and/or transient interactions, and is amenable to temporal regulation. Initially applied to mammalian cells, BioID has potential application in a variety of cell types from diverse species. © 2018 by John Wiley & Sons, Inc.
Copyright © 2018 John Wiley & Sons, Inc.

Entities:  

Keywords:  BioID; biotinylation; protein-protein interaction; proximity-dependent labeling

Mesh:

Substances:

Year:  2018        PMID: 29516480      PMCID: PMC6028010          DOI: 10.1002/cpps.51

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  19 in total

1.  Split-BioID: a proximity biotinylation assay for dimerization-dependent protein interactions.

Authors:  Sofie De Munter; Janina Görnemann; Rita Derua; Bart Lesage; Junbin Qian; Ewald Heroes; Etienne Waelkens; Aleyde Van Eynde; Monique Beullens; Mathieu Bollen
Journal:  FEBS Lett       Date:  2017-01-12       Impact factor: 4.124

2.  Targeted and proximity-dependent promiscuous protein biotinylation by a mutant Escherichia coli biotin protein ligase.

Authors:  John E Cronan
Journal:  J Nutr Biochem       Date:  2005-07       Impact factor: 6.048

Review 3.  Filling the Void: Proximity-Based Labeling of Proteins in Living Cells.

Authors:  Dae In Kim; Kyle J Roux
Journal:  Trends Cell Biol       Date:  2016-09-22       Impact factor: 20.808

4.  Promiscuous protein biotinylation by Escherichia coli biotin protein ligase.

Authors:  Eunjoo Choi-Rhee; Howard Schulman; John E Cronan
Journal:  Protein Sci       Date:  2004-09-30       Impact factor: 6.725

5.  Proximity-Dependent Biotin Identification (BioID) in Dictyostelium Amoebae.

Authors:  Petros Batsios; Irene Meyer; Ralph Gräf
Journal:  Methods Enzymol       Date:  2015-10-01       Impact factor: 1.600

6.  Novel bilobe components in Trypanosoma brucei identified using proximity-dependent biotinylation.

Authors:  Brooke Morriswood; Katharina Havlicek; Lars Demmel; Sevil Yavuz; Marco Sealey-Cardona; Keni Vidilaseris; Dorothea Anrather; Julius Kostan; Kristina Djinovic-Carugo; Kyle J Roux; Graham Warren
Journal:  Eukaryot Cell       Date:  2012-12-21

7.  A promiscuous biotin ligase fusion protein identifies proximal and interacting proteins in mammalian cells.

Authors:  Kyle J Roux; Dae In Kim; Manfred Raida; Brian Burke
Journal:  J Cell Biol       Date:  2012-03-12       Impact factor: 10.539

8.  Novel components of the Toxoplasma inner membrane complex revealed by BioID.

Authors:  Allan L Chen; Elliot W Kim; Justin Y Toh; Ajay A Vashisht; Andrew Q Rashoff; Christina Van; Amy S Huang; Andy S Moon; Hannah N Bell; Laurent A Bentolila; James A Wohlschlegel; Peter J Bradley
Journal:  MBio       Date:  2015-02-17       Impact factor: 7.867

9.  An improved smaller biotin ligase for BioID proximity labeling.

Authors:  Dae In Kim; Samuel C Jensen; Kyle A Noble; Birendra Kc; Kenneth H Roux; Khatereh Motamedchaboki; Kyle J Roux
Journal:  Mol Biol Cell       Date:  2016-02-24       Impact factor: 4.138

10.  BioID data of c-MYC interacting protein partners in cultured cells and xenograft tumors.

Authors:  Pak-Kei Chan; Tharan Srikumar; Dharmendra Dingar; Manpreet Kalkat; Linda Z Penn; Brian Raught
Journal:  Data Brief       Date:  2014-10-14
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  57 in total

1.  Structural and functional dissection of reovirus capsid folding and assembly by the prefoldin-TRiC/CCT chaperone network.

Authors:  Jonathan J Knowlton; Daniel Gestaut; Boxue Ma; Gwen Taylor; Alpay Burak Seven; Alexander Leitner; Gregory J Wilson; Sreejesh Shanker; Nathan A Yates; B V Venkataram Prasad; Ruedi Aebersold; Wah Chiu; Judith Frydman; Terence S Dermody
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-16       Impact factor: 11.205

2.  Histone Interaction Landscapes Visualized by Crosslinking Mass Spectrometry in Intact Cell Nuclei.

Authors:  Domenico Fasci; Hugo van Ingen; Richard A Scheltema; Albert J R Heck
Journal:  Mol Cell Proteomics       Date:  2018-07-18       Impact factor: 5.911

3.  The N-terminal domain of the adaptor protein p140Cap interacts with Tiam1 and controls Tiam1/Rac1 axis.

Authors:  Jennifer Chapelle; Annalisa Baudino; Federico Torelli; Aurora Savino; Alessandro Morellato; Costanza Angelini; Vincenzo Salemme; Giorgia Centonze; Dora Natalini; Marta Gai; Valeria Poli; Thilo Kähne; Emilia Turco; Paola Defilippi
Journal:  Am J Cancer Res       Date:  2020-12-01       Impact factor: 6.166

4.  The RTK Interactome: Overview and Perspective on RTK Heterointeractions.

Authors:  Michael D Paul; Kalina Hristova
Journal:  Chem Rev       Date:  2018-12-27       Impact factor: 60.622

5.  β-Actin mRNA interactome mapping by proximity biotinylation.

Authors:  Joyita Mukherjee; Orit Hermesh; Carolina Eliscovich; Nicolas Nalpas; Mirita Franz-Wachtel; Boris Maček; Ralf-Peter Jansen
Journal:  Proc Natl Acad Sci U S A       Date:  2019-06-12       Impact factor: 11.205

6.  Mapping p38α mitogen-activated protein kinase signaling by proximity-dependent labeling.

Authors:  Emmanuel Prikas; Anne Poljak; Arne Ittner
Journal:  Protein Sci       Date:  2020-04-07       Impact factor: 6.725

7.  Proteomic Analysis Reveals a Role for RSK in p120-catenin Phosphorylation and Melanoma Cell-Cell Adhesion.

Authors:  Antoine Méant; Beichen Gao; Geneviève Lavoie; Sami Nourreddine; Flora Jung; Léo Aubert; Joseph Tcherkezian; Anne-Claude Gingras; Philippe P Roux
Journal:  Mol Cell Proteomics       Date:  2019-11-02       Impact factor: 5.911

8.  Cellular Cleavage and Polyadenylation Specificity Factor 6 (CPSF6) Mediates Nuclear Import of Human Bocavirus 1 NP1 Protein and Modulates Viral Capsid Protein Expression.

Authors:  Xiaomei Wang; Peng Xu; Fang Cheng; Yi Li; Zekun Wang; Siyuan Hao; Jianke Wang; Kang Ning; Safder S Ganaie; John F Engelhardt; Ziying Yan; Jianming Qiu
Journal:  J Virol       Date:  2020-01-06       Impact factor: 5.103

9.  Central Nervous System-Infecting Pathogens Escherichia coli and Cryptococcus neoformans Exploit the Host Pdlim2 for Intracellular Traversal and Exocytosis in the Blood-Brain Barrier.

Authors:  Zhongming Li; Vincent M Bruno; Kwang Sik Kim
Journal:  Infect Immun       Date:  2021-07-06       Impact factor: 3.441

10.  Nestin Is Required for Spindle Assembly and Cell-Cycle Progression in Glioblastoma Cells.

Authors:  Qinglin Wang; Hao Wu; Jian Hu; Haijuan Fu; Yanghui Qu; Yijun Yang; Kathy Q Cai; Andrey Efimov; Minghua Wu; Tim Yen; Yuan Wang; Zeng-Jie Yang
Journal:  Mol Cancer Res       Date:  2021-06-22       Impact factor: 5.852

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