Literature DB >> 29512106

CRISPR-Cas9-Based Genome Editing of Human Induced Pluripotent Stem Cells.

Joseph C Giacalone1, Tasneem P Sharma1, Erin R Burnight1, John F Fingert1, Robert F Mullins1, Edwin M Stone1, Budd A Tucker1.   

Abstract

Human induced pluripotent stem cells (hiPSCs) are the ideal cell source for autologous cell replacement. However, for patients with Mendelian diseases, genetic correction of the original disease-causing mutation is likely required prior to cellular differentiation and transplantation. The emergence of the CRISPR-Cas9 system has revolutionized the field of genome editing. By introducing inexpensive reagents that are relatively straightforward to design and validate, it is now possible to correct genetic variants or insert desired sequences at any location within the genome. CRISPR-based genome editing of patient-specific iPSCs shows great promise for future autologous cell replacement therapies. One caveat, however, is that hiPSCs are notoriously difficult to transfect, and optimized experimental design considerations are often necessary. This unit describes design strategies and methods for efficient CRISPR-based genome editing of patient- specific iPSCs. Additionally, it details a flexible approach that utilizes positive selection to generate clones with a desired genomic modification, Cre-lox recombination to remove the integrated selection cassette, and negative selection to eliminate residual hiPSCs with intact selection cassettes. © 2018 by John Wiley & Sons, Inc.
Copyright © 2018 John Wiley & Sons, Inc.

Entities:  

Keywords:  CRISPR-Cas9; autologous cell replacement; genome editing; hiPSC

Mesh:

Substances:

Year:  2018        PMID: 29512106      PMCID: PMC5846340          DOI: 10.1002/cpsc.46

Source DB:  PubMed          Journal:  Curr Protoc Stem Cell Biol        ISSN: 1938-8969


  36 in total

1.  Genome editing in human stem cells.

Authors:  Susan M Byrne; Prashant Mali; George M Church
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

Review 2.  Innate and adaptive immunity in bacteria: mechanisms of programmed genetic variation to fight bacteriophages.

Authors:  David Bikard; Luciano A Marraffini
Journal:  Curr Opin Immunol       Date:  2011-11-11       Impact factor: 7.486

3.  Short DNA sequences inserted for gene targeting can accidentally interfere with off-target gene expression.

Authors:  Ingo D Meier; Christian Bernreuther; Thomas Tilling; John Neidhardt; Yong Wee Wong; Christian Schulze; Thomas Streichert; Melitta Schachner
Journal:  FASEB J       Date:  2010-01-28       Impact factor: 5.191

4.  Herpes simplex virus thymidine kinase and ganciclovir suicide gene therapy for human pancreatic cancer.

Authors:  Jing Wang; Xiao-Xuan Lu; Dao-Zhen Chen; Shu-Feng Li; Li-Shan Zhang
Journal:  World J Gastroenterol       Date:  2004-02-01       Impact factor: 5.742

5.  Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells.

Authors:  Jizhong Zou; Morgan L Maeder; Prashant Mali; Shondra M Pruett-Miller; Stacey Thibodeau-Beganny; Bin-Kuan Chou; Guibin Chen; Zhaohui Ye; In-Hyun Park; George Q Daley; Matthew H Porteus; J Keith Joung; Linzhao Cheng
Journal:  Cell Stem Cell       Date:  2009-06-18       Impact factor: 24.633

6.  Optimization of scarless human stem cell genome editing.

Authors:  Luhan Yang; Marc Guell; Susan Byrne; Joyce L Yang; Alejandro De Los Angeles; Prashant Mali; John Aach; Caroline Kim-Kiselak; Adrian W Briggs; Xavier Rios; Po-Yi Huang; George Daley; George Church
Journal:  Nucleic Acids Res       Date:  2013-07-31       Impact factor: 16.971

7.  Zinc Finger Tools: custom DNA-binding domains for transcription factors and nucleases.

Authors:  Jeffrey G Mandell; Carlos F Barbas
Journal:  Nucleic Acids Res       Date:  2006-07-01       Impact factor: 16.971

8.  A CRISPR/Cas-Mediated Selection-free Knockin Strategy in Human Embryonic Stem Cells.

Authors:  Zengrong Zhu; Nipun Verma; Federico González; Zhong-Dong Shi; Danwei Huangfu
Journal:  Stem Cell Reports       Date:  2015-05-28       Impact factor: 7.765

9.  Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR.

Authors:  Maximilian Haeussler; Kai Schönig; Hélène Eckert; Alexis Eschstruth; Joffrey Mianné; Jean-Baptiste Renaud; Sylvie Schneider-Maunoury; Alena Shkumatava; Lydia Teboul; Jim Kent; Jean-Stephane Joly; Jean-Paul Concordet
Journal:  Genome Biol       Date:  2016-07-05       Impact factor: 13.583

10.  Easi-CRISPR: a robust method for one-step generation of mice carrying conditional and insertion alleles using long ssDNA donors and CRISPR ribonucleoproteins.

Authors:  Rolen M Quadros; Hiromi Miura; Donald W Harms; Hisako Akatsuka; Takehito Sato; Tomomi Aida; Ronald Redder; Guy P Richardson; Yutaka Inagaki; Daisuke Sakai; Shannon M Buckley; Parthasarathy Seshacharyulu; Surinder K Batra; Mark A Behlke; Sarah A Zeiner; Ashley M Jacobi; Yayoi Izu; Wallace B Thoreson; Lisa D Urness; Suzanne L Mansour; Masato Ohtsuka; Channabasavaiah B Gurumurthy
Journal:  Genome Biol       Date:  2017-05-17       Impact factor: 13.583

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  11 in total

Review 1.  The Post-GWAS Era: How to Validate the Contribution of Gene Variants in Lupus.

Authors:  Adam J Fike; Irina Elcheva; Ziaur S M Rahman
Journal:  Curr Rheumatol Rep       Date:  2019-01-23       Impact factor: 4.592

Review 2.  CRISPR-Cas9 genome engineering: Treating inherited retinal degeneration.

Authors:  Erin R Burnight; Joseph C Giacalone; Jessica A Cooke; Jessica R Thompson; Laura R Bohrer; Kathleen R Chirco; Arlene V Drack; John H Fingert; Kristan S Worthington; Luke A Wiley; Robert F Mullins; Edwin M Stone; Budd A Tucker
Journal:  Prog Retin Eye Res       Date:  2018-03-22       Impact factor: 21.198

3.  Highly Efficient CRISPR-Cas9-Mediated Genome Editing in Human Pluripotent Stem Cells.

Authors:  Jean Ann Maguire; Fabian L Cardenas-Diaz; Paul Gadue; Deborah L French
Journal:  Curr Protoc Stem Cell Biol       Date:  2018-10-24

4.  Correction of NR2E3 Associated Enhanced S-cone Syndrome Patient-specific iPSCs using CRISPR-Cas9.

Authors:  Laura R Bohrer; Luke A Wiley; Erin R Burnight; Jessica A Cooke; Joseph C Giacalone; Kristin R Anfinson; Jeaneen L Andorf; Robert F Mullins; Edwin M Stone; Budd A Tucker
Journal:  Genes (Basel)       Date:  2019-04-05       Impact factor: 4.096

Review 5.  Cell and Gene Therapies for Mucopolysaccharidoses: Base Editing and Therapeutic Delivery to the CNS.

Authors:  Chloe L Christensen; Rhea E Ashmead; Francis Y M Choy
Journal:  Diseases       Date:  2019-06-26

Review 6.  Recent advances in human stem cell-based modeling of Tuberous Sclerosis Complex.

Authors:  Wardiya Afshar Saber; Mustafa Sahin
Journal:  Mol Autism       Date:  2020-02-19       Impact factor: 7.509

7.  A transient reporter for editing enrichment (TREE) in human cells.

Authors:  Kylie Standage-Beier; Stefan J Tekel; Nicholas Brookhouser; Grace Schwarz; Toan Nguyen; Xiao Wang; David A Brafman
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

Review 8.  Transplantation of fat tissues and iPSC-derived energy expenditure adipocytes to counteract obesity-driven metabolic disorders: Current strategies and future perspectives.

Authors:  Vincent Dani; Xi Yao; Christian Dani
Journal:  Rev Endocr Metab Disord       Date:  2021-03-22       Impact factor: 9.306

Review 9.  Research and therapy with induced pluripotent stem cells (iPSCs): social, legal, and ethical considerations.

Authors:  Sharif Moradi; Hamid Mahdizadeh; Tomo Šarić; Johnny Kim; Javad Harati; Hosein Shahsavarani; Boris Greber; Joseph B Moore
Journal:  Stem Cell Res Ther       Date:  2019-11-21       Impact factor: 6.832

Review 10.  Microfluidic processing of stem cells for autologous cell replacement.

Authors:  Nicholas E Stone; Andrew P Voigt; Robert F Mullins; Todd Sulchek; Budd A Tucker
Journal:  Stem Cells Transl Med       Date:  2021-06-22       Impact factor: 6.940

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