| Literature DB >> 29511388 |
Alessandra Meloni1, Francesco Palmas2, Luigi Barberini3, Rossella Mereu1, Sara Francesca Deiana1, Maria Francesca Fais1, Antonio Noto4, Claudia Fattuoni2, Michele Mussap5, Antonio Ragusa6, Angelica Dessì4, Roberta Pintus4, Vassilios Fanos4, Gian Benedetto Melis1.
Abstract
Since pathologies and complications occurring during pregnancy and/or during labour may cause adverse outcomes for both newborns and mothers, there is a growing interest in metabolomic applications on pregnancy investigation. In fact, metabolomics has proved to be an efficient strategy for the description of several perinatal conditions. In particular, this study focuses on premature rupture of membranes (PROM) in pregnancy at term. For this project, urine samples were collected at three different clinical conditions: out of labour before PROM occurrence (Ph1), out of labour with PROM (Ph2), and during labour with PROM (Ph3). GC-MS analysis, followed by univariate and multivariate statistical analysis, was able to discriminate among the different classes, highlighting the metabolites most involved in the discrimination.Entities:
Mesh:
Year: 2018 PMID: 29511388 PMCID: PMC5817378 DOI: 10.1155/2018/1042479
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Statistically significant (FDR < 0.05) metabolites from univariate analysis (ANOVA with Tukey's HSD post hoc test) of the three classes Ph1, Ph2, and Ph3.
| Metabolite | Chemical class |
| FDR | Tukey's HSD |
|---|---|---|---|---|
|
| Misc | 2.01 | 0.00015894 | 2-1, 3-1, 3-2 |
| 2,3,4,5-Tetrahydroxypentanoic acid 1,4-lactone | Ox | 8.63 | 0.00026357 | 2-1, 3-1, 3-2 |
| Erythronic acid | Ox | 1.20 | 0.00026357 | 2-1, 3-1, 3-2 |
| 3-Hydroxybutyric acid | Misc | 1.75 | 0.00026357 | 3-1, 3-2 |
| 3,4-Dihydroxybutyric acid | Misc | 1.95 | 0.00026357 | 2-1, 3-2 |
| Glucaric acid | Ox | 2.00 | 0.00026357 | 2-1, 3-2 |
| Unknown C | Misc | 2.91 | 0.00029809 | 3-1, 3-2 |
| Pseudouridine | Misc | 3.02E − 01 | 0.00029809 | 3-1, 3-2 |
| Erythritol | SR | 3.98 | 0.00030706 | 3-1, 3-2 |
| Gulonic acid | Ox | 4.00 | 0.00030706 | 3-1, 3-2 |
| Monosaccharide 1886 | SR | 4.28 | 0.00030706 | 3-1, 3-2 |
| Pyroglutamic acid | Misc | 5.02 | 0.00033075 | 2-1, 3-2 |
| Arabitol | SR | 5.44 | 0.00033075 | 3-1, 3-2 |
| Fucose | Carb | 5.94 | 0.00033536 | 3-1, 3-2 |
| Ribitol | SR | 6.53 | 0.00034397 | 2-1, 3-2 |
| Tyrosine | AA | 0.00011408 | 0.00056327 | 2-1, 3-2 |
| Xylobiose | Carb | 0.00016349 | 0.00075975 | 3-2 |
| 3,4,5-Trihydroxypentanoic acid | Misc | 0.00023492 | 0.0010311 | 2-1, 3-2 |
| Histidine | AA | 0.00027084 | 0.0011261 | 2-1, 3-2 |
| Gluconic acid | Ox | 0.00040226 | 0.0015889 | 3-2 |
| Serine | AA | 0.00050574 | 0.0019025 | 2-1, 3-2 |
| Lysine | AA | 0.0005569 | 0.0019615 | 2-1, 3-2 |
| Monosaccharide E | SR | 0.00058834 | 0.0019615 | 3-2 |
| Xylitol | SR | 0.00059589 | 0.0019615 | 3-1, 3-2 |
| Phenylalanine | AA | 0.00089953 | 0.0028425 | 2-1, 3-2 |
| Threonine | AA | 0.00098451 | 0.0029914 | 2-1, 3-2 |
| Quinolinic acid | Misc | 0.0012588 | 0.003683 | 2-1, 3-2 |
| 4-Deoxythreonic acid | SR | 0.0014511 | 0.0040942 | 3-2 |
| Cystine | AA | 0.0015954 | 0.004346 | 3-2 |
| Succinic acid | Misc | 0.0024091 | 0.0063441 | 3-2 |
| Alanine | AA | 0.0027785 | 0.0070807 | 2-1, 3-2 |
|
| SR | 0.0035822 | 0.0088435 | 3-2 |
| Phosphate | Misc | 0.0037469 | 0.0089697 | 3-2 |
| Ribonic acid | Ox | 0.0042205 | 0.0098065 | 3-2 |
| 2-Amino-6-hydroxy-7-methyl-7H-purine | Misc | 0.0043539 | 0.0098274 | 3-1, 3-2 |
| Hydroxyproline dipeptide | AA | 0.0048016 | 0.010537 | 2-1, 3-2 |
| Maltose | Carb | 0.0050599 | 0.010804 | 2-1, 3-1 |
| Glutamine | AA | 0.0055744 | 0.011425 | 2-1, 3-2 |
| Glycine, | Misc | 0.0057479 | 0.011425 | 2-1, 3-2 |
| Threonic acid | Ox | 0.005785 | 0.011425 | 2-1, 3-2 |
| 2-O-Glycerol-galactopyranoside | SR | 0.006708 | 0.012925 | 2-1, 3-2 |
| Lactose | Carb | 0.0077141 | 0.01451 | 2-1, 3-2 |
| Ribose | Carb | 0.0088787 | 0.016312 | 3-2 |
| Citric acid | Misc | 0.0092274 | 0.016567 | 3-2 |
| Galactose | Carb | 0.010113 | 0.017412 | 3-1 |
| 4-Hydroxyphenylacetic acid | Misc | 0.010139 | 0.017412 | 2-1, 3-2 |
| Glucose | Carb | 0.012002 | 0.020173 | 2-1 |
| Glycine, | Misc | 0.018028 | 0.029671 | 3-2 |
| Uric acid | Misc | 0.0197 | 0.031761 | 3-2 |
| Threitol | SR | 0.020579 | 0.032514 | 3-2 |
| Galactitol | SR | 0.021507 | 0.033314 | 2-1 |
| Hippuric acid | Misc | 0.023726 | 0.035603 | 3-2 |
| Creatinine | Misc | 0.023885 | 0.035603 | 2-1, 3-2 |
| 2,4-Dihydroxybutyric acid | Misc | 0.026377 | 0.038588 | 3-2 |
| 2-Ketogluconic acid | Ox | 0.027386 | 0.039336 | 3-2 |
| Arabinose | Carb | 0.028179 | 0.039753 | 3-1 |
| Sedoheptulose | Carb | 0.028971 | 0.040153 | 3-2 |
| 4-Deoxyerythronic acid | Ox | 0.034187 | 0.046565 | 3-2 |
Figure 1(a) 2D score plot showing PLS-DA discrimination between Ph1 (red, out of labour, intact membranes), Ph2 (green, out of labour, PROM), and Ph3 (blue, in labour, PROM) and (b) the corresponding VIP score plot.
Figure 2Power analysis calculations indicated a predictive power of 0.83 for 120 samples per group and an FDR of 0.1.
Statistically significant (FDR < 0.05) metabolites from the t-test of the classes Ph2 versus Ph3.
| Metabolite | Chemical class |
| FDR | Ph2 versus Ph3 |
|---|---|---|---|---|
| Gulonic acid | Ox | 7.31 | 5.63 | Down |
| Erythronic acid | Ox | 3.00 | 7.03 | Down |
| 2,3,4,5-Tetrahydroxypentanoic acid 1.4-lactone | Ox | 3,53E-03 | 7.03 | Down |
|
| Misc | 4,44E-02 | 7.03 | Down |
| Glucaric acid | Ox | 4.76 | 7.03 | Down |
| Pyroglutamic acid | Misc | 5.48 | 7.03 | Down |
| Ribitol | SR | 9.12 | 9.12 | Down |
| Arabitol | SR | 9.47 | 9.12 | Down |
| Fucose | Carb | 1.07 | 9.14 | Down |
| Unknown C | Misc | 1.34 | 0.00010306 | Down |
| Tyrosine | AA | 1.52 | 0.0001065 | Down |
| Erythritol | SR | 1.87 | 0.00011968 | Down |
| Pseudouridine | Misc | 2.55 | 0.00015105 | Down |
| 3,4-Dihydroxybutyric acid | Misc | 4.19 | 0.00023071 | Down |
| Monosaccharide 1886 | Carb | 5.13 | 0.00026311 | Down |
| Xylobiose | Carb | 5.80 | 0.00027903 | Down |
| Gluconic acid | Ox | 6.60 | 0.00029457 | Down |
| Histidine | AA | 7.26 | 0.00029457 | Down |
| 4-Deoxythreonic acid | Ox | 7.27 | 0.00029457 | Down |
| 3-Hydroxybutyric acid | Misc | 9.00 | 0.00034512 | Down |
| Phenylalanine | AA | 0.00010095 | 0.00034512 | Down |
| Monosaccharide E | Carb | 0.0001043 | 0.00034512 | Down |
| 3,4,5-Trihydroxypentanoic acid | Ox | 0.00010624 | 0.00034512 | Down |
| Sedoheptulose | Carb | 0.00010757 | 0.00034512 | Down |
| Quinolinic acid | Misc | 0.00012733 | 0.00039216 | Down |
| Xylitol | SR | 0.00017953 | 0.00053168 | Down |
| Phosphate | Misc | 0.00020953 | 0.00059755 | Up |
| Lysine | AA | 0.000373 | 0.0010074 | Down |
| Succinic acid | Misc | 0.00037941 | 0.0010074 | Down |
| Ribose | Carb | 0.00049401 | 0.001268 | Down |
| Threonine | AA | 0.00055591 | 0.0013069 | Down |
| Cystine | AA | 0.00056022 | 0.0013069 | Down |
| 2-Amino-6-hydroxy-7-methyl-7H-purine | Misc | 0.00056835 | 0.0013069 | Down |
| Serine | AA | 0.00057708 | 0.0013069 | Down |
|
| SR | 0.00074989 | 0.0016498 | Down |
| Citric acid | Misc | 0.0009237 | 0.0019757 | Down |
| Ribonic acid | Ox | 0.0013077 | 0.0027213 | Down |
| Glutamine | AA | 0.0014072 | 0.0028515 | Down |
| Lactose | Carb | 0.0020445 | 0.0040365 | Up |
| Glucose | Carb | 0.0024816 | 0.004777 | Down |
| Hydroxyproline dipeptide | AA | 0.0028275 | 0.0053102 | Down |
| Glycine, | Misc | 0.0038577 | 0.0070724 | Down |
| 2-Ketogluconic acid | Ox | 0.0045002 | 0.0080016 | Down |
| 2,4-Dihydroxybutyric acid | Misc | 0.0045723 | 0.0080016 | Down |
| Threonic acid | Ox | 0.0047704 | 0.0081627 | Down |
| 4-Hydroxyphenylacetic acid | Misc | 0.0051136 | 0.0085598 | Down |
| Alanine | AA | 0.0052474 | 0.0085968 | Down |
| 2-O-Glycerol-galactopyranoside | SR | 0.0071983 | 0.011547 | Down |
| Threitol | SR | 0.0091347 | 0.014354 | Down |
| Glycine, | Misc | 0.010305 | 0.015869 | Down |
| Creatinine | Misc | 0.012953 | 0.019557 | Down |
| Uric acid | Misc | 0.014046 | 0.020799 | Up |
| 3-Methylhistidine | AA | 0.014579 | 0.02117 | Down |
| Glyceromannoheptonic acid | Ox | 0.014847 | 0.02117 | Down |
| Hippuric acid | Misc | 0.015776 | 0.022086 | Down |
| Inositol | SR | 0.016169 | 0.022232 | Down |
| Arabinose | Carb | 0.017089 | 0.023086 | Down |
| 4-Deoxyerythronic acid | Ox | 0.017767 | 0.023587 | Down |
| Ethanolamine | Misc | 0.024206 | 0.031591 | Down |
| Mannitol | SR | 0.026258 | 0.033697 | Down |
Figure 3(a) Score plot showing the separation and clustering between Ph2 (2, triangles) and Ph3 (3, crosses) and (b) the corresponding VIP score plot.
Figure 4Power analysis calculations indicated a predictive power of 0.83 for 50 samples per group and an FDR of 0.1.