Literature DB >> 29509425

It Pays To Be in Phase.

Alan K Itakura, Raymond A Futia, Daniel F Jarosz.   

Abstract

To survive, organisms must orchestrate competing biochemical and regulatory processes in time and space. Recent work has suggested that the underlying chemical properties of some biomolecules allow them to self-organize and that life may have exploited this property to organize biochemistry in space and time. Such phase separation is ubiquitous, particularly among the many regulatory proteins that harbor prion-like intrinsically disordered domains. And yet, despite evident regulation by post-translational modification and myriad other stimuli, the biological significance of many phase-separated compartments remains uncertain. Many potential functions have been proposed, but far fewer have been demonstrated. A burgeoning subfield at the intersection of cell biology and polymer physics has defined the biophysical underpinnings that govern the genesis and stability of these particles. The picture is complex: many assemblies are composed of multiple proteins that each have the capacity to phase separate. Here, we briefly discuss this foundational work and survey recent efforts combining targeted biochemical perturbations and quantitative modeling to specifically address the diverse roles that phase separation processes may play in biology.

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Year:  2018        PMID: 29509425      PMCID: PMC6008099          DOI: 10.1021/acs.biochem.8b00205

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  111 in total

1.  Stress granule assembly is mediated by prion-like aggregation of TIA-1.

Authors:  Natalie Gilks; Nancy Kedersha; Maranatha Ayodele; Lily Shen; Georg Stoecklin; Laura M Dember; Paul Anderson
Journal:  Mol Biol Cell       Date:  2004-09-15       Impact factor: 4.138

Review 2.  P-bodies and stress granules: possible roles in the control of translation and mRNA degradation.

Authors:  Carolyn J Decker; Roy Parker
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

Review 3.  Sequence-encoded material properties dictate the structure and function of nuclear bodies.

Authors:  Stephanie C Weber
Journal:  Curr Opin Cell Biol       Date:  2017-03-23       Impact factor: 8.382

4.  Prion induction involves an ancient system for the sequestration of aggregated proteins and heritable changes in prion fragmentation.

Authors:  Jens Tyedmers; Sebastian Treusch; Jijun Dong; J Michael McCaffery; Brooke Bevis; Susan Lindquist
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-26       Impact factor: 11.205

5.  The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.

Authors:  Elizabeth S Freeman Rosenzweig; Bin Xu; Luis Kuhn Cuellar; Antonio Martinez-Sanchez; Miroslava Schaffer; Mike Strauss; Heather N Cartwright; Pierre Ronceray; Jürgen M Plitzko; Friedrich Förster; Ned S Wingreen; Benjamin D Engel; Luke C M Mackinder; Martin C Jonikas
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

6.  Adaptation to Stressors by Systemic Protein Amyloidogenesis.

Authors:  Timothy E Audas; Danielle E Audas; Mathieu D Jacob; J J David Ho; Mireille Khacho; Miling Wang; J Kishan Perera; Caroline Gardiner; Clay A Bennett; Trajen Head; Oleksandr N Kryvenko; Mercé Jorda; Sylvia Daunert; Arun Malhotra; Laura Trinkle-Mulcahy; Mark L Gonzalgo; Stephen Lee
Journal:  Dev Cell       Date:  2016-10-06       Impact factor: 12.270

7.  Dynamics of carbon-concentrating mechanism induction and protein relocalization during the dark-to-light transition in synchronized Chlamydomonas reinhardtii.

Authors:  Madeline C Mitchell; Moritz T Meyer; Howard Griffiths
Journal:  Plant Physiol       Date:  2014-08-08       Impact factor: 8.340

8.  G3BP-Caprin1-USP10 complexes mediate stress granule condensation and associate with 40S subunits.

Authors:  Nancy Kedersha; Marc D Panas; Christopher A Achorn; Shawn Lyons; Sarah Tisdale; Tyler Hickman; Marshall Thomas; Judy Lieberman; Gerald M McInerney; Pavel Ivanov; Paul Anderson
Journal:  J Cell Biol       Date:  2016-03-28       Impact factor: 10.539

9.  Spatial patterning of P granules by RNA-induced phase separation of the intrinsically-disordered protein MEG-3.

Authors:  Jarrett Smith; Deepika Calidas; Helen Schmidt; Tu Lu; Dominique Rasoloson; Geraldine Seydoux
Journal:  Elife       Date:  2016-12-03       Impact factor: 8.140

Review 10.  The contribution of intrinsically disordered regions to protein function, cellular complexity, and human disease.

Authors:  M Madan Babu
Journal:  Biochem Soc Trans       Date:  2016-10-15       Impact factor: 5.407

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  15 in total

Review 1.  Viral and cellular interactions during adenovirus DNA replication.

Authors:  Matthew Charman; Christin Herrmann; Matthew D Weitzman
Journal:  FEBS Lett       Date:  2019-12-17       Impact factor: 4.124

Review 2.  Friend or foe-Post-translational modifications as regulators of phase separation and RNP granule dynamics.

Authors:  Mario Hofweber; Dorothee Dormann
Journal:  J Biol Chem       Date:  2018-12-26       Impact factor: 5.157

3.  Human Antiviral Protein MxA Forms Novel Metastable Membraneless Cytoplasmic Condensates Exhibiting Rapid Reversible Tonicity-Driven Phase Transitions.

Authors:  Deodate Davis; Huijuan Yuan; Feng-Xia Liang; Yang-Ming Yang; Jenna Westley; Chris Petzold; Kristen Dancel-Manning; Yan Deng; Joseph Sall; Pravin B Sehgal
Journal:  J Virol       Date:  2019-10-29       Impact factor: 5.103

Review 4.  More than Just a Phase: Prions at the Crossroads of Epigenetic Inheritance and Evolutionary Change.

Authors:  Anupam K Chakravarty; Daniel F Jarosz
Journal:  J Mol Biol       Date:  2018-07-19       Impact factor: 5.469

Review 5.  Mutations, protein homeostasis, and epigenetic control of genome integrity.

Authors:  Jinglin Lucy Xie; Daniel F Jarosz
Journal:  DNA Repair (Amst)       Date:  2018-08-23

6.  Osmolyte Induced Tumorigenesis and Metastasis: Interactions With Intrinsically Disordered Proteins.

Authors:  Franklin D Rumjanek
Journal:  Front Oncol       Date:  2018-08-28       Impact factor: 6.244

7.  Biomolecular condensates in cancer cell biology: interleukin-6-induced cytoplasmic and nuclear STAT3/PY-STAT3 condensates in hepatoma cells.

Authors:  Pravin B Sehgal
Journal:  Contemp Oncol (Pozn)       Date:  2019-02-26

8.  A Rubisco-binding protein is required for normal pyrenoid number and starch sheath morphology in Chlamydomonas reinhardtii.

Authors:  Alan K Itakura; Kher Xing Chan; Nicky Atkinson; Leif Pallesen; Lianyong Wang; Gregory Reeves; Weronika Patena; Oliver Caspari; Robyn Roth; Ursula Goodenough; Alistair J McCormick; Howard Griffiths; Martin C Jonikas
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-27       Impact factor: 11.205

Review 9.  Cellular stress leads to the formation of membraneless stress assemblies in eukaryotic cells.

Authors:  Wessel van Leeuwen; Catherine Rabouille
Journal:  Traffic       Date:  2019-07-30       Impact factor: 6.215

10.  Musashi-1: An Example of How Polyalanine Tracts Contribute to Self-Association in the Intrinsically Disordered Regions of RNA-Binding Proteins.

Authors:  Tsai-Chen Chen; Jie-Rong Huang
Journal:  Int J Mol Sci       Date:  2020-03-26       Impact factor: 5.923

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