Literature DB >> 29507423

Expansions of intronic TTTCA and TTTTA repeats in benign adult familial myoclonic epilepsy.

Hiroyuki Ishiura1, Koichiro Doi2, Jun Mitsui1, Jun Yoshimura2, Miho Kawabe Matsukawa1, Asao Fujiyama3, Yasuko Toyoshima4, Akiyoshi Kakita4, Hitoshi Takahashi4, Yutaka Suzuki2, Sumio Sugano5, Wei Qu2, Kazuki Ichikawa2, Hideaki Yurino6, Koichiro Higasa7, Shota Shibata1, Aki Mitsue1, Masaki Tanaka1, Yaeko Ichikawa8, Yuji Takahashi9, Hidetoshi Date1, Takashi Matsukawa1, Junko Kanda1, Fumiko Kusunoki Nakamoto1, Mana Higashihara10, Koji Abe11, Ryoko Koike12, Mutsuo Sasagawa13, Yasuko Kuroha12, Naoya Hasegawa14, Norio Kanesawa15, Takayuki Kondo16, Takefumi Hitomi16,17, Masayoshi Tada18, Hiroki Takano19, Yutaka Saito20, Kazuhiro Sanpei21, Osamu Onodera18, Masatoyo Nishizawa22, Masayuki Nakamura23, Takeshi Yasuda24, Yoshio Sakiyama25, Mieko Otsuka26, Akira Ueki, Ken-Ichi Kaida27, Jun Shimizu1, Ritsuko Hanajima28, Toshihiro Hayashi1, Yasuo Terao29, Satomi Inomata-Terada1, Masashi Hamada1, Yuichiro Shirota1, Akatsuki Kubota1, Yoshikazu Ugawa30, Kishin Koh31, Yoshihisa Takiyama31, Natsumi Ohsawa-Yoshida32, Shoichi Ishiura32,33, Ryo Yamasaki34, Akira Tamaoka35, Hiroshi Akiyama36, Taisuke Otsuki37, Akira Sano23, Akio Ikeda38, Jun Goto39, Shinichi Morishita2, Shoji Tsuji40,41,42.   

Abstract

Epilepsy is a common neurological disorder, and mutations in genes encoding ion channels or neurotransmitter receptors are frequent causes of monogenic forms of epilepsy. Here we show that abnormal expansions of TTTCA and TTTTA repeats in intron 4 of SAMD12 cause benign adult familial myoclonic epilepsy (BAFME). Single-molecule, real-time sequencing of BAC clones and nanopore sequencing of genomic DNA identified two repeat configurations in SAMD12. Intriguingly, in two families with a clinical diagnosis of BAFME in which no repeat expansions in SAMD12 were observed, we identified similar expansions of TTTCA and TTTTA repeats in introns of TNRC6A and RAPGEF2, indicating that expansions of the same repeat motifs are involved in the pathogenesis of BAFME regardless of the genes in which the expanded repeats are located. This discovery that expansions of noncoding repeats lead to neuronal dysfunction responsible for myoclonic tremor and epilepsy extends the understanding of diseases with such repeat expansion.

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Year:  2018        PMID: 29507423     DOI: 10.1038/s41588-018-0067-2

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  40 in total

1.  Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences.

Authors:  Heng Li
Journal:  Bioinformatics       Date:  2016-03-19       Impact factor: 6.937

2.  Familial cortical myoclonic tremor with epilepsy: the third locus (FCMTE3) maps to 5p.

Authors:  C Depienne; E Magnin; D Bouteiller; G Stevanin; C Saint-Martin; M Vidailhet; E Apartis; E Hirsch; E LeGuern; P Labauge; L Rumbach
Journal:  Neurology       Date:  2010-06-15       Impact factor: 9.910

3.  Localization of a gene for benign adult familial myoclonic epilepsy to chromosome 8q23.3-q24.1.

Authors:  M Mikami; T Yasuda; A Terao; M Nakamura; S Ueno; H Tanabe; T Tanaka; T Onuma; Y Goto; S Kaneko; A Sano
Journal:  Am J Hum Genet       Date:  1999-09       Impact factor: 11.025

4.  Cortical tremor: a variant of cortical reflex myoclonus.

Authors:  A Ikeda; R Kakigi; N Funai; R Neshige; Y Kuroda; H Shibasaki
Journal:  Neurology       Date:  1990-10       Impact factor: 9.910

5.  Fine mapping and whole-exome sequencing of a familial cortical myoclonic tremor with epilepsy family.

Authors:  Zhi-Dong Cen; Fei Xie; Dan-Ning Lou; Xing-Jiao Lu; Zhi-Yuan Ouyang; Ling Liu; Jin Cao; Dan Li; Hou-Min Yin; Zhong-Jin Wang; Jian-Feng Xiao; Wei Luo
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2015-06-30       Impact factor: 3.568

6.  Remapping and mutation analysis of benign adult familial myoclonic epilepsy in a Japanese pedigree.

Authors:  Satsuki Mori; Masayuki Nakamura; Takeshi Yasuda; Shu-Ichi Ueno; Sunao Kaneko; Akira Sano
Journal:  J Hum Genet       Date:  2011-08-18       Impact factor: 3.172

7.  A newly identified locus for benign adult familial myoclonic epilepsy on chromosome 3q26.32-3q28.

Authors:  Patra Yeetong; Surasawadee Ausavarat; Roongroj Bhidayasiri; Krisna Piravej; Nath Pasutharnchat; Tayard Desudchit; Chaipat Chunharas; Jakrin Loplumlert; Chusak Limotai; Kanya Suphapeetiporn; Vorasuk Shotelersuk
Journal:  Eur J Hum Genet       Date:  2012-06-20       Impact factor: 4.246

8.  Genetic localization of the familial adult myoclonic epilepsy (FAME) gene to chromosome 8q24.

Authors:  N M Plaster; E Uyama; M Uchino; T Ikeda; K M Flanigan; I Kondo; L J Ptácek
Journal:  Neurology       Date:  1999-10-12       Impact factor: 9.910

9.  Large C9orf72 hexanucleotide repeat expansions are seen in multiple neurodegenerative syndromes and are more frequent than expected in the UK population.

Authors:  Jon Beck; Mark Poulter; Davina Hensman; Jonathan D Rohrer; Colin J Mahoney; Gary Adamson; Tracy Campbell; James Uphill; Aaron Borg; Pietro Fratta; Richard W Orrell; Andrea Malaspina; James Rowe; Jeremy Brown; John Hodges; Katie Sidle; James M Polke; Henry Houlden; Jonathan M Schott; Nick C Fox; Martin N Rossor; Sarah J Tabrizi; Adrian M Isaacs; John Hardy; Jason D Warren; John Collinge; Simon Mead
Journal:  Am J Hum Genet       Date:  2013-02-21       Impact factor: 11.025

10.  Autosomal dominant cortical myoclonus and epilepsy (ADCME) with complex partial and generalized seizures: A newly recognized epilepsy syndrome with linkage to chromosome 2p11.1-q12.2.

Authors:  R Guerrini; P Bonanni; A Patrignani; P Brown; L Parmeggiani; P Grosse; P Brovedani; F Moro; P Aridon; R Carrozzo; G Casari
Journal:  Brain       Date:  2001-12       Impact factor: 13.501

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  79 in total

1.  Overexpressed HspB6 Underlines a Novel Inhibitory Role in Kainic Acid-Induced Epileptic Seizure in Rats by Activating the cAMP-PKA Pathway.

Authors:  Ai-Qin Qi; Yan-Hui Zhang; Qin-De Qi; Ye-Hui Liu; Jun-Ling Zhu
Journal:  Cell Mol Neurobiol       Date:  2018-12-03       Impact factor: 5.046

2.  Detecting Expansions of Tandem Repeats in Cohorts Sequenced with Short-Read Sequencing Data.

Authors:  Rick M Tankard; Mark F Bennett; Peter Degorski; Martin B Delatycki; Paul J Lockhart; Melanie Bahlo
Journal:  Am J Hum Genet       Date:  2018-11-29       Impact factor: 11.025

Review 3.  New pathologic mechanisms in nucleotide repeat expansion disorders.

Authors:  C M Rodriguez; P K Todd
Journal:  Neurobiol Dis       Date:  2019-06-21       Impact factor: 5.996

Review 4.  Long-read sequencing for rare human genetic diseases.

Authors:  Satomi Mitsuhashi; Naomichi Matsumoto
Journal:  J Hum Genet       Date:  2019-09-27       Impact factor: 3.172

5.  Progressive myoclonus epilepsies-Residual unsolved cases have marked genetic heterogeneity including dolichol-dependent protein glycosylation pathway genes.

Authors:  Carolina Courage; Karen L Oliver; Eon Joo Park; Jillian M Cameron; Kariona A Grabińska; Mikko Muona; Laura Canafoglia; Antonio Gambardella; Edith Said; Zaid Afawi; Betul Baykan; Christian Brandt; Carlo di Bonaventura; Hui Bein Chew; Chiara Criscuolo; Leanne M Dibbens; Barbara Castellotti; Patrizia Riguzzi; Angelo Labate; Alessandro Filla; Anna T Giallonardo; Geza Berecki; Christopher B Jackson; Tarja Joensuu; John A Damiano; Sara Kivity; Amos Korczyn; Aarno Palotie; Pasquale Striano; Davide Uccellini; Loretta Giuliano; Eva Andermann; Ingrid E Scheffer; Roberto Michelucci; Melanie Bahlo; Silvana Franceschetti; William C Sessa; Samuel F Berkovic; Anna-Elina Lehesjoki
Journal:  Am J Hum Genet       Date:  2021-04-01       Impact factor: 11.025

6.  The Key to FAME: Intronic Repeat Expansions Cause Human Epilepsies.

Authors:  Ingrid E Scheffer
Journal:  Epilepsy Curr       Date:  2018 Jul-Aug       Impact factor: 7.500

7.  Profiling the genome-wide landscape of tandem repeat expansions.

Authors:  Nima Mousavi; Sharona Shleizer-Burko; Richard Yanicky; Melissa Gymrek
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

8.  Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS.

Authors:  Haruko Nakamura; Hiroshi Doi; Satomi Mitsuhashi; Satoko Miyatake; Kazutaka Katoh; Martin C Frith; Tetsuya Asano; Yosuke Kudo; Takuya Ikeda; Shun Kubota; Misako Kunii; Yu Kitazawa; Mikiko Tada; Mitsuo Okamoto; Hideto Joki; Hideyuki Takeuchi; Naomichi Matsumoto; Fumiaki Tanaka
Journal:  J Hum Genet       Date:  2020-02-18       Impact factor: 3.172

9.  Epilepsy in families: Age at onset is a familial trait, independent of syndrome.

Authors:  Colin A Ellis; Leonid Churilov; Michael P Epstein; Sharon X Xie; Susannah T Bellows; Ruth Ottman; Samuel F Berkovic
Journal:  Ann Neurol       Date:  2019-05-20       Impact factor: 10.422

10.  Evolution of a Human-Specific Tandem Repeat Associated with ALS.

Authors:  Meredith M Course; Kathryn Gudsnuk; Samuel N Smukowski; Kosuke Winston; Nitin Desai; Jay P Ross; Arvis Sulovari; Cynthia V Bourassa; Dan Spiegelman; Julien Couthouis; Chang-En Yu; Debby W Tsuang; Suman Jayadev; Mark A Kay; Aaron D Gitler; Nicolas Dupre; Evan E Eichler; Patrick A Dion; Guy A Rouleau; Paul N Valdmanis
Journal:  Am J Hum Genet       Date:  2020-08-03       Impact factor: 11.025

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