Literature DB >> 29504926

Whole-genome sequencing reveals that Shewanella haliotis Kim et al. 2007 can be considered a later heterotypic synonym of Shewanella algae Simidu et al. 1990.

Nadia Szeinbaum1, Cailin E Kellum2, Jennifer B Glass2, J Michael Janda3, Thomas J DiChristina1.   

Abstract

Previously, experimental DNA-DNA hybridization (DDH) between Shewanellahaliotis JCM 14758T and Shewanellaalgae JCM 21037T had suggested that the two strains could be considered different species, despite minimal phenotypic differences. The recent isolation of Shewanella sp. MN-01, with 99 % 16S rRNA gene identity to S. algae and S. haliotis, revealed a potential taxonomic problem between these two species. In this study, we reassessed the nomenclature of S. haliotis and S. algae using available whole-genome sequences. The whole-genome sequence of S. haliotis JCM 14758T and ten S. algae strains showed ≥97.7 % average nucleotide identity and >78.9 % digital DDH, clearly above the recommended species thresholds. According to the rules of priority and in view of the results obtained, S. haliotis is to be considered a later heterotypic synonym of S. algae. Because the whole-genome sequence of Shewanella sp. strain MN-01 shares >99 % ANI with S. algae JCM 14758T, it can be confidently identified as S. algae.

Entities:  

Keywords:  Shewanella algae; Shewanella haliotis; heterotypic synonym

Mesh:

Substances:

Year:  2018        PMID: 29504926     DOI: 10.1099/ijsem.0.002678

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

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Review 3.  Summary of Novel Bacterial Isolates Derived from Human Clinical Specimens and Nomenclature Revisions Published in 2018 and 2019.

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Journal:  J Clin Microbiol       Date:  2021-01-21       Impact factor: 5.948

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5.  Characterization of putative pathogenic Shewanella algae isolated from ballast water.

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6.  Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation.

Authors:  Alberto J Martín-Rodríguez; Shawn M Higdon; Kaisa Thorell; Christian Tellgren-Roth; Åsa Sjöling; Michael Y Galperin; Tino Krell; Ute Römling
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  6 in total

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