| Literature DB >> 29498640 |
Anat Lodin-Friedman1, Shmuel Carmeli2.
Abstract
During blooms, cyanobacteria produce diverse modified peptides. Among these are the microginins, which inhibit zinc-containing metalloproteases. Ten microginins, microginins KR767 (1), KR801(2), KR835 (3), KR785 (4), KR604 (5), KR638 (6), KR781 (7), KR815 (8), FR3 (9), and FR4 (10), were isolated from the extract of a bloom material of Microcystis sp. (IL-405) collected from the Kishon Reservoir, Israel in the fall of 2009. The structures of the pure compounds were elucidated using 1D and 2D NMR techniques and high-resolution mass spectrometry. The absolute configuration of the chiral centers of the amino acids were determined by Marfey's and advance Marfey's methods and by comparison of ¹H and 13C NMR chemical shifts of the Ahda derivatives with those of known microginins. These microginins differ in sequence and absolute configuration of the chiral centers of the Ahda moieties and by N-methylation of the Ahda amine group and extent of chlorination of the Ahda terminal methyl group. The compounds were evaluated for inhibition of the zinc metalloprotease, aminopeptidase M, and exhibited low- to sub-nanomolar half maximal inhibitory concentration (IC50) values.Entities:
Keywords: Microcystis; aminopeptidase M inhibitors; cyanobacteria; microginins
Mesh:
Substances:
Year: 2018 PMID: 29498640 PMCID: PMC5867622 DOI: 10.3390/md16030078
Source DB: PubMed Journal: Mar Drugs ISSN: 1660-3397 Impact factor: 5.118
Figure 1Microginins isolated from Microcystis sp. (Tel Aviv University (TAU) collection number: IL-405).
1H NMR data (500 MHz) of microginins 1–10 in DMSO-d6.
| Position | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | Position | 9 | 10 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ahda 2 | 4.30 | 4.30 | 4.30 | 4.14 | 4.26 | 4.29 | 4.30 | 4.30 | Ahda 2 | 4.10 | 4.18 |
| 2-OH | 6.47 | 6.47 | 6.46 | 6.35 | 6.35 | 6.41 | 6.35 | 6.40 | 2-OH | 6.61 | 6.82 |
| 3 | 3.27 | 3.27 | 3.27 | 3.27 | 3.14 | 3.24 | 3.22 | 3.24 | 3 | 3.22 | 3.30 |
| 3-NH1/2/3 | 8.35 | 8.36 | 8.35 | 7.83 | 8.00 | 7.24 | 8.42 | 8.42 | 3- | 7.71 | 8.17 |
| 8.49 | 8.49 | 8.48 | 8.36 | ||||||||
| 3- | 2.56 | 2.56 | 2.56 | - | 2.51 | 2.55 | 2.53 | 2.55 | 3- | - | 2.50 |
| 4 | 1.39 | 1.39 | 1.40 | 1.37 | 1.34 | 1.41 | 1.36 | 1.39 | 4 | 1.59 | 1.58 |
| 1.33 | 1.32 | 1.33 | 1.22 | 1.28 | 1.33 | 1.32 | 1.31 | 1.44 | 1.55 | ||
| 5 | 1.25 | 1.23 | 1.24 | 1.26 | 1.27 | 1.38 | 1.24 | 1.24 | 5 | 1.34 | 1.33 |
| 1.13 | 1.11 | 1.14 | 1.12 | 1.13 | 1.14 | 1.13 | 1.13 | 1.29 | 1.30 | ||
| 6 | 1.18 | 1.13 | 1.22 | 1.13 | 1.14 | 1.15 | 1.17 | 1.13 | 6 | 1.23 | 1.23 |
| 1.13 | 1.15 | 1.13 | |||||||||
| 7 | 1.19 | 1.18 | 1.24 | 1.22 | 1.19 | 1.22 | 1.20 | 1.22 | 7 | 1.23 | 1.23 |
| 8 | 1.20 | 1.33 | 1.43 | 1.34 | 1.20 | 1.34 | 1.20 | 1.33 | 8 | 1.23 | 1.23 |
| 9 | 1.24 | 1.68 | 2.13 | 1.68 | 1.26 | 1.68 | 1.25 | 1.67 | 9 | 1.24 | 1.24 |
| 10 | 0.84 | 3.60 | 6.29 | 3.60 | 0.84 | 3.60 | 0.84 | 3.60 | 10 | 0.85 | 0.85 |
| 1Tyr 2 | 4.86 | 4.86 | 4.86 | 4.84 | 4.87 | 4.86 | 4.86 | 4.86 | Thr 2 | 4.48 | 4.47 |
| 2-NH | 8.10 | 8.09 | 8.09 | 8.04 | 8.03 | 8.09 | 8.05 | 8.09 | 2-NH | 7.86 | 7.91 |
| 3 | 2.86 | 2.86 | 2.86 | 2.88 | 2.87 | 2.87 | 2.87 | 2.85 | 3 | 3.94 | 3.93 |
| 2.74 | 2.74 | 2.74 | 2.74 | 2.74 | 2.75 | 2.74 | 2.74 | ||||
| 5,5′ | 7.00 | 7.00 | 7.01 | 7.00 | 6.98 | 6.99 | 6.99 | 6.99 | 3-OH | 5.13 | 5.10 |
| 6,6′ | 6.62 | 6.62 | 6.62 | 6.62 | 6.61 | 6.62 | 6.62 | 6.62 | 4 | 1.14 | 1.14 |
| 7-OH | 9.25 | 9.26 | 9.26 | 9.24 | 9.24 | 9.25 | 9.25 | 9.25 | |||
| MeLue 2 | 5.23 | 5.23 | 5.23 | 5.23 | 5.24 | 5.24 | 5.23 | 5.23 | Pro 2 | 4.32 | 4.32 |
| 2- | 2.89 | 2.90 | 2.90 | 2.88 | 2.86 | 2.87 | 2.88 | 2.89 | 3 | 1.90 | 1.90 |
| 1.69 | 1.70 | ||||||||||
| 3 | 1.48 | 1.45 | 1.46 | 1.45 | 1.53 | 1.53 | 1.47 | 1.47 | 4 | 1.74 | 1.74 |
| 1.42 | 1.42 | 1.42 | 1.42 | 1.36 | 1.38 | 1.42 | 1.41 | 1.62 | 1.65 | ||
| 4 | 1.37 | 1.35 | 1.37 | 1.37 | 1.39 | 1.39 | 1.38 | 1.38 | 5 | 3.63 | 3.64 |
| 5 | 0.81 | 0.81 | 0.81 | 0.80 | 0.82 | 0.82 | 0.81 | 0.81 | 1Tyr 2 | 4.38 | 4.38 |
| 6 | 0.85 | 0.85 | 0.85 | 0.85 | 0.85 | 0.86 | 0.85 | 0.85 | 2-NH | 7.64 | 7.64 |
| Pro 2 | 4.31 | 4.31 | 4.32 | 4.30 | 4.17 | 4.18 | 4.29 | 4.29 | 3 | 2.87 | 2.87 |
| 2.62 | 2.63 | ||||||||||
| 3 | 1.94 | 1.95 | 1.94 | 1.94 | 2.10 | 2.11 | 1.95 | 1.97 | 5,5′ | 7.00 | 7.00 |
| 1.79 | 1.79 | 1.79 | 1.81 | 1.82 | 1.82 | 1.73 | 1.74 | ||||
| 4 | 1.80 | 1.76 | 1.80 | 1.81 | 1.86 | 1.86 | 1.80 | 1.78 | 6,6′ | 6.61 | 6.60 |
| 1.73 | 1.73 | 1.73 | 1.76 | 1.81 | 1.81 | 1.75 | 1.73 | ||||
| 5 | 3.40 | 3.40 | 3.40 | 3.40 | 3.40 | 3.41 | 3.39 | 3.40 | 7-OH | 9.13 | 9.12 |
| 3.18 | 3.18 | 3.19 | 3.18 | 3.24 | 3.26 | 3.17 | 3.18 | ||||
| 2Tyr 2 | 4.27 | 4.27 | 4.26 | 4.27 | - | - | 4.31 | 4.30 | 2Tyr 2 | 4.31 | 4.31 |
| 2-NH | 7.92 | 7.92 | 7.92 | 7.93 | - | - | 8.15 | 8.15 | 2-NH | 8.03 | 8.04 |
| 3 | 2.86 | 2.86 | 2.87 | 2.88 | - | - | 2.86 | 2.86 | 3 | 2.89 | 2.90 |
| 2.79 | 2.78 | 2.78 | 2.78 | 2.82 | 2.82 | 2.79 | 2.79 | ||||
| 5,5′ | 7.01 | 7.01 | 7.00 | 6.99 | - | - | 7.00 | 7.00 | 5,5′ | 7.00 | 7.00 |
| 6,6′ | 6.64 | 6.64 | 6.64 | 6.62 | - | - | 6.64 | 6.64 | 6,6′ | 6.63 | 6.63 |
| 7-OH | 9.20 | 9.21 | 9.20 | 9.19 | - | - | 9.23 | 9.23 | 7-OH | 9.18 | 9.17 |
| OCH3 | - | - | - | - | - | - | 3.53 | 3.53 |
13C NMR data (125 MHz) of microginins 1–10 in DMSO-d6.
| Position | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | Position | 9 | 10 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Ahda 1 | 170.1 | 170.1 | 170.1 | 170.2 | 170.5 | 170.1 | 170.2 | 170.1 | Ahda 1 | 170.8 | 171.2 |
| 2 | 68.5 | 68.4 | 68.5 | 70.9 | 68.7 | 68.4 | 68.5 | 68.4 | 2 | 69.6 | 68.2 |
| 3 | 60.3 | 60.3 | 60.2 | 53.4 | 60.5 | 60.2 | 60.3 | 60.3 | 3 | 53.1 | 60.1 |
| 3- | 30.8 | 30.8 | 30.8 | - | 31.4 | 30.8 | 30.8 | 30.8 | 3- | - | 31.3 |
| 4 | 26.1 | 26.0 | 26.0 | 26.8 | 25.4 | 26.1 | 26.1 | 26.0 | 4 | 28.8 | 27.9 |
| 5 | 25.2 | 25.1 | 25.0 | 25.0 | 24.2 | 25.2 | 25.3 | 25.1 | 5 | 24.8 | 25.1 |
| 6 | 29.2 | 29.0 | 28.9 | 29.0 | 28.6 | 29.1 | 29.2 | 29.0 | 6 | 28.5 | 28.6 |
| 7 | 28.6 | 28.2 | 27.8 | 28.2 | 29.2 | 28.2 | 28.6 | 28.2 | 7 | 28.9 | 28.9 |
| 8 | 31.4 | 26.3 | 25.4 | 26.4 | 31.3 | 26.4 | 31.4 | 26.4 | 8 | 31.3 | 31.4 |
| 9 | 22.2 | 32.2 | 43.0 | 32.2 | 22.2 | 32.2 | 22.3 | 32.2 | 9 | 22.2 | 22.2 |
| 10 | 14.1 | 45.4 | 75.0 | 45.6 | 14.1 | 45.5 | 14.1 | 45.5 | 10 | 14.1 | 14.1 |
| 1Tyr 1 | 171.0 | 171.0 | 171.0 | 171.2 | 171.0 | 171.0 | 171.0 | 171.0 | Thr 1 | 168.6 | 168.5 |
| 2 | 50.6 | 50.6 | 50.6 | 50.7 | 50.4 | 50.5 | 50.6 | 50.6 | 2 | 56.0 | 56.2 |
| 3 | 36.4 | 36.4 | 36.4 | 36.3 | 36.6 | 36.5 | 36.4 | 36.4 | 3 | 67.0 | 67.0 |
| 4 | 126.1 | 126.9 | 126.9 | 127.0 | 126.9 | 126.9 | 126.9 | 126.9 | 4 | 19.3 | 19.5 |
| 5,5′ | 130.2 | 130.3 | 130.3 | 130.4 | 130.3 | 130.3 | 130.3 | 130.3 | Pro 1 | 171.0 | 171.0 |
| 6,6′ | 115.1 | 115.1 | 115.1 | 115.2 | 115.1 | 115.0 | 115.2 | 115.2 | 2 | 59.5 | 59.5 |
| 7 | 156.2 | 156.2 | 156.2 | 156.2 | 156.2 | 156.0 | 156.2 | 156.2 | 3 | 29.0 | 29.1 |
| 168.5 | 168.5 | 168.5 | 168.5 | 168.3 | 168.3 | 168.4 | 168.4 | 4 | 24.2 | 24.2 | |
| 2 | 51.9 | 51.9 | 51.9 | 52.0 | 51.6 | 51.7 | 51.9 | 51.9 | 5 | 47.4 | 47.5 |
| 2- | 30.2 | 30.2 | 30.2 | 30.2 | 30.1 | 30.2 | 30.2 | 30.2 | 1Tyr 1 | 171.0 | 171.0 |
| 3 | 37.2 | 37.1 | 37.2 | 37.2 | 37.2 | 37.2 | 37.2 | 37.1 | 2 | 54.1 | 54.2 |
| 4 | 24.2 | 24.3 | 24.2 | 24.3 | 24.2 | 24.2 | 24.3 | 24.2 | 3 | 36.6 | 36.7 |
| 5 | 22.4 | 22.3 | 22.4 | 22.3 | 22.4 | 22.5 | 22.4 | 22.4 | 4 | 127.8 | 127.9 |
| 6 | 23.0 | 23.1 | 23.1 | 23.2 | 22.8 | 22.9 | 23.0 | 23.1 | 5,5′ | 130.2 | 130.2 |
| Pro 1 | 171.4 | 171.5 | 171.5 | 171.5 | 173.4 | 173.2 | 171.7 | 171.7 | 6,6′ | 114.9 | 115.0 |
| 2 | 59.4 | 59.4 | 59.4 | 59.4 | 58.8 | 58.8 | 59.3 | 59.3 | 7 | 155.9 | 155.9 |
| 3 | 29.1 | 29.1 | 29.1 | 29.1 | 28.8 | 28.8 | 29.2 | 29.1 | 2Tyr 1 | 172.9 | 172.9 |
| 4 | 24.3 | 24.2 | 24.3 | 24.1 | 24.6 | 24.6 | 24.2 | 24.3 | 2 | 53.9 | 54.0 |
| 5 | 46.7 | 46.7 | 46.7 | 46.7 | 46.5 | 46.5 | 46.7 | 46.7 | 3 | 36.2 | 36.2 |
| 2Tyr 1 | 173.1 | 173.1 | 173.1 | 173.1 | - | - | 172.2 | 172.2 | 4 | 127.4 | 127.4 |
| 2 | 54.0 | 54.0 | 54.0 | 54.1 | - | - | 54.3 | 54.2 | 5,5′ | 130.2 | 130.3 |
| 3 | 36.1 | 36.1 | 36.1 | 36.2 | - | - | 36.1 | 36.1 | 6,6′ | 115.1 | 115.1 |
| 4 | 127.5 | 127.5 | 127.6 | 127.6 | - | - | 127.2 | 127.2 | 7 | 156.1 | 156.1 |
| 5,5′ | 130.3 | 130.3 | 130.3 | 130.3 | - | - | 130.2 | 130.2 | |||
| 6,6′ | 115.1 | 115.1 | 115.1 | 115.2 | - | - | 115.2 | 115.1 | |||
| 7 | 156.1 | 156.1 | 156.1 | 156.1 | - | - | 156.2 | 156.2 | |||
| OCH3 | - | - | - | - | - | - | 51.9 | 51.8 |
Figure 2NMR correlations that supported the elucidation of the structure of microginin KR767 (1).
Comparison of the chemical shifts of Ahda-C-2, H-2, C-3, and H-3 in DMSO-d6 of 1–10 and known microginins.
| Compound | Ahda Derivative | Absolute Configuration | C-2 | H-2 | C-3 | H-3 |
|---|---|---|---|---|---|---|
| Microginin [ | Ahda | (2 | 69.5 | 4.04 | 52.9 | 3.21 |
| Microginin 51-A [ | Ahda | (2 | 70.4 | 4.14 | 52.9 | 3.24 |
| Microginin 51-B [ | (2 | 68.1 | 4.28 | 59.8 | 3.22 | |
| Microginin 478 [ | (2 | 68.3 | 4.18 | 60.0 | 3.20 | |
| Microginin 91-A [ | Cl-Ahda | (2 | 70.5 | 4.26 | 53.0 | 3.36 |
| Microginin 91-C [ | Ahda | (2 | 71.0 | 4.18 | 52.8 | 3.27 |
| Microginin 91-D [ | Cl-Ahda | (2 | 70.5 | 4.26 | 53.0 | 3.36 |
| Microginin 91-E [ | Cl2-Ahda | (2 | 70.7 | 4.26 | 53.0 | 3.36 |
| Microginin 299-A [ | Cl-Ahda | (2 | 70.6 | 4.23 | 53.0 | 3.37 |
| Microginin 299-B [ | Cl2-Ahda | (2 | 70.6 | 4.25 | 52.9 | 3.37 |
| Microginin 299-C [ | Ahda | (2 | 70.6 | 4.20 | 53.0 | 3.37 |
| Microginin 299-D [ | Cl2-Ahda | (2 | 70.6 | 4.21 | 52.9 | 3.36 |
| Microginin AL584 [ | Cl-Ahda | (2 | 71.3 | 4.19 | 53.3 | 3.30 |
| Microginin KR767 ( | (2 | 68.5 | 4.30 | 60.3 | 3.27 | |
| Microginin KR801 ( | Cl- | (2 | 68.4 | 4.30 | 60.3 | 3.27 |
| Microginin KR835 ( | Cl2- | (2 | 68.5 | 4.30 | 60.2 | 3.27 |
| Microginin KR787 ( | Cl-Ahda | (2 | 70.9 | 4.14 | 53.4 | 3.27 |
| Microginin KR604 ( | (2 | 68.7 | 4.26 | 60.5 | 3.14 | |
| Microginin KR638 ( | Cl- | (2 | 68.4 | 4.29 | 60.2 | 3.24 |
| Microginin KR781 ( | (2 | 68.5 | 4.30 | 60.3 | 3.22 | |
| Microginin KR815 ( | Cl- | (2 | 68.4 | 4.30 | 60.3 | 3.24 |
| Microginin FR3 ( | Ahda | (2 | 69.4 | 4.10 | 53.1 | 3.22 |
| Microginin FR4 ( | (2 | 68.0 | 4.18 | 60.1 | 3.30 |
Figure 3NMR correlations that supported the elucidation of the structure of microginin FR3 (9).
Inhibition of aminopeptidase M by the isolated microginins.
| Compound Name | IC50 in μM ± SD | Compound Name | IC50 in μM ± SD |
|---|---|---|---|
| Microginin KR767 ( | 0.5 ± 0.2 | Microginin KR638 ( | 3.8 ± 0.3 |
| Microginin KR801 ( | 0.1 ± 0.2 | Microginin KR815 ( | 72.0 ± 0.1 |
| Microginin KR835 ( | 0.4 ± 0.2 | Microginin FR3 ( | 6.2 ± 0.03 |
| Microginin KR787 ( | 5.7 ± 0.1 | Microginin FR4 ( | 1.8 ± 0.04 |
| Microginin KR604 ( | 7.5 ± 0.1 | - | - |