| Literature DB >> 29497475 |
Tahseen Raza Hashmi1,2, Salam Rita Devi1, Naresh M Meshram1, Ram Prasad2.
Abstract
Endosymbionts are vital factor for arthropod ecology. The whitefly Bemisia tabaci (Hemiptera: Aleyrodidae) is a cryptic species complex composed of more than 34 putative species. Moreover to the primary endosymbiont Portiera aleyrodidarum, six secondary endosymbionts Cardinium, Arsenophonus, Rickettsia, Wolbachia, Hamiltonella and Fritschea are known in B. tabaci. Here, we tested four of the six secondary endosymbiont lineages (excluding Fritschea and Hamiltonella) from 180 whitely individuals collected from six host plants belonging to families Solanaceae (Brinjal, Tomato and Potato) and Fabaceae (Soyabean, Mungbean and Subabool). Phylogenetic studies grounded on the mitochondrial cytochrome I gene revealed the presence of Asia 1, Asia II 1 and Asia II 7 genetic groups for B. tabaci. Specific primers targeting 16S rRNA and 23S rRNA gene were used for estimating the bacterial endosymbionts. As a primary endosymbiont Portiera aleyrodidarum was present in all the studied samples; whereas, an uneven distribution of secondary endosymbionts were recorded. Overall our finding exposes the variation and diversity of endosymbionts within the B. tabaci collected from different host plants and outlines the genetic groups of the insect pest. The study delivers a significant information concerning the circulation of secondary endosymbionts with host preferences of B. tabaci and provides suggestion for progressive studies on targeting the specific endosymbionts with respect to host for the control measures.Entities:
Keywords: Bemisia tabaci; distribution; endosymbionts; genetic groups; host plants
Year: 2018 PMID: 29497475 PMCID: PMC5824966 DOI: 10.1080/19420889.2018.1433442
Source DB: PubMed Journal: Commun Integr Biol ISSN: 1942-0889
Primers used in PCR detection of endosymbionts and genetic groups.
| Targeted gene | Primer's Sequence (5′→3′) | Annealing temp. (0C)/ Product size (bp) | Reference |
|---|---|---|---|
| F-CGCCCGCCGCGCCCCGCGCCCGTCCCGCCGCCCCCGCCCGR- CCGTCAATTCMTTTGAGTTT | 60/550 | ||
| F- GCGGTGTAAAATGAGCGTGR- ACCTMTTCTTAACTCAAGCCT | 58/400 | ||
| F- GCTCAGAACGAACGCTATCR- GAAGGAAAGCATCTCTGC | 60/900 | ||
| F- CGGGGGAAAAATTTATTGCTR- AGCTGTAATACAGAAAGTAAA | 55/700 | ||
| F- CGTTTGATGAATTCATAGTCAAAR- GGTCCTCCAGTTAGTGTTACCCAAC | 60/600 | ||
| F- TTGATTTTTTGGTCATCCAGAAGTR- TCCAATGCACTAATCTGCCATATTA | 52/800 |
Figure 1.Distribution frequency of bacterial endosymbionts in Bemisia tabaci from Solanaceous and Malvaceous host plants.
Figure 2.Phylogram of the evaluated Bemisia tabaci samples with well-assigned homologous sequences of the B. tabaci genetic groups from the consensus sequence database by means of maximum likelihood (ML) tree method and the kimura 2-parameter distances mitochondrial COI sequences.
Figure 3.Subtree of evaluated Bemisia tabaci samples aligning with Asia II 1 genetic group with well-assigned homologous sequences from the consensus sequence database by means of maximum likelihood (ML) tree method and the kimura 2-parameter distances mitochondrial COI sequences.
Figure 4.Subtree of evaluated Bemisia tabaci samples aligning with Asia II 7 genetic group with well-assigned homologous sequences from the consensus sequence database by means of maximum likelihood (ML) tree method and the kimura 2-parameter distances mitochondrial COI sequences.
Figure 5.Subtree of evaluated Bemisia tabaci samples aligning with Asia 1 genetic group with well-assigned homologous sequences from the consensus sequence database by means of maximum likelihood (ML) tree method and the kimura 2-parameter distances mitochondrial COI sequences.
PCR programs used to detect the prevalence of primary and secondary endosymbionts in Bemisia tabaci.
| Cycling conditions | |||||
|---|---|---|---|---|---|
| Endosymbionts | Pre- denaturation | Denaturation | Annealing | Extension | Cycles |
| 94°C (4 Min) | 94°C (30 s) | 56°C (2 Min) | 72°C (2 Min) | 35 | |
| 94°C (4 Min) | 94°C (30 s) | 55°C (2 Min) | 72°C (2 Min) | 35 | |
| 94°C (4 Min) | 94°C (30 s) | 56°C (2 Min) | 72°C (2 Min) | 35 | |
| 94°C (4 Min) | 94°C (30 s) | 52°C (2 Min) | 72°C (2 Min) | 35 | |
| 94°C (4 Min) | 94°C (30 s) | 58°C (2 Min) | 72°C (2 Min) | 35 | |
| 94°C (1 Min) | 94°C (1 Min) | 55°C (1 Min) | 72°C (1 Min) | 35 | |
Showing GenBank Accession numbers, along with locality data of mtCOI.
| S.No. | Species | Genetic group | Location | GenBank Sequence ID |
|---|---|---|---|---|
| 1. | Asia 1 | India: Tamilnadu | GQ281714 | |
| 2. | Asia 1 | China: Guangxi | EU192044 | |
| 3. | Asia 1 | Malaysia: Kuala Lumpur | AY686093 | |
| 4. | Asia 1 | India: Gujarat | GQ281721 | |
| 5. | Asia II 2 | China: Jiangsu | AY686088 | |
| 6. | Asia II 3 | China: Guangxi | EU192045 | |
| 7. | Asia II 3 | China: Zhejiang | DQ309074 | |
| 8. | Asia II 4 | China: Guangdong | AY686083 | |
| 9. | Asia II 5 | India: Karnataka | AJ748376 | |
| 10. | Asia II 5 | India: Karnataka | AF418666 | |
| 11. | Asia II 6 | Taiwan | DQ174520 | |
| 12. | Asia II 6 | China: Guangxi | HM137338 | |
| 13. | Asia II 6 | China: Yunnan | HQ916813 | |
| 14. | Asia II 8 | India: Karnataka | AJ748358 | |
| 15. | Asia II 8 | India: Karnataka | AJ748374 | |
| 16. | Asia II 8 | India: Gujarat | GQ281733 | |
| 17. | Asia II 9 | China: Hunan | HM137313 | |
| 18. | Asia II 9 | China: Hunan | HM137345 | |
| 19. | Asia II 10 | China: Guangdong | HM137356 | |
| 20. | Asia II 10 | China: Guangdong | HM137339 | |
| 21. | Asia II 1 | China: Guangdong | HM137326 | |
| 22. | Asia II 1 | China: Guangxi | EU192047 | |
| 23. | Asia II 1 | Pakistan: Faisalabad | GU585369 | |
| 24. | Asia II 1 | Syria: Hims | FJ802389 | |
| 25. | Asia II 1 | Taiwan: Chiayi | DQ174519 | |
| 26. | Asia II 1 | Pakistan: Punjab | GU585372 | |
| 27. | Asia II 7 | China: Guangdong | AY686064 | |
| 28. | Asia II 7 | Taiwan | AY686075 | |
| 29. | Asia II 7 | India: Tamil Nadu | DQ116660 | |
| 30. | Asia II 7 | Taiwan | DQ174521 | |
| 31. | Asia II 7 | China: Guangdong | DQ174523 | |
| 32. | Asia II 7 | China: Fujian | GQ139492 | |
| 33. | Asia II 7 | India: Andhra Pradesh | DQ116650 | |
| 34. | Asia II 7 | India: Tamil Nadu | DQ116661 | |
| 35. | Asia II 7 | India: Tamil Nadu | AM408899 | |
| 36. | Asia III | Japan: Okinwa | AB440792 | |
| 37. | Asia III | Taiwan | DQ174527 | |
| 38. | Asia III | Taiwan | DQ174528 | |
| 39. | Australia | Australia | GU086328 | |
| 40. | Indonesia | Indonesia | GU086325 | |
| 41. | Indonesia | Indonesia | HQ457045 | |
| 42. | China 1 | China: Sichuan | HM137315 | |
| 43. | China 2 | China: Guangdong | AY686072 | |
| 44. | China 2 | China: Yunnan | HQ916820 | |
| 45. | China 3 | China: Yunnan | EU192050 | |
| 46. | Indian Ocean | Madagascar | AJ550171 | |
| 47. | Indian Ocean | Reunion | AJ550179 | |
| 48. | Indian Ocean | Uganda: Busukuma | AY903537 | |
| 49. | Indian Ocean | Uganda: Namulonge | AY903523 | |
| 50. | Italy | Italy | AY827596 | |
| 51. | Italy | Italy | AY827599 | |
| 52. | Italy | Italy | AY827602 | |
| 53. | Japan 2 | Japan: Hiroshima | AB240967 | |
| 54. | Japan 2 | Japan: Kumamoto | AB308115 | |
| 55. | Japan 2 | Japan: Kumamoto | AB308116 | |
| 56. | Japan 2 | Japan: Oita | AB308117 | |
| 57. | Mediterranean | Burkina Faso | FJ766384 | |
| 58. | Mediterranean | Burkina Faso | FJ766408 | |
| 59. | Mediterranean | Cameroon | EU760741 | |
| 60. | Mediterranean | Hubei | EF667476 | |
| 61. | Mediterranean | China: Yunnan | EU192049 | |
| 62. | Mediterranean | Crete | DQ365856 | |
| 63. | Mediterranean | Croatia | GU086336 | |
| 64. | Mediterranean | Czech Republic | GU086330 | |
| 65. | Mediterranean | Turkey | AY827619 | |
| 66. | Mediterranean | Uganda | AY903578 | |
| 67. | Mediterranean | Zimbabwe | AF344285 | |
| 68. | Middle East Asia Minor 1 | Argentina: Buenos Aires | AF340215 | |
| 69. | Middle East Asia Minor 1 | China: Fujian | AY686062 | |
| 70. | Middle East Asia Minor 1 | Dominican Republic | GU086349 | |
| 71. | Middle East Asia Minor 1 | Egypt: Ismailia | GU977249 | |
| 72. | Middle East Asia Minor 1 | Guadeloupe: Saint Francois | AM180064 | |
| 73. | Middle East Asia Minor 1 | India: Karnataka | AJ748368 | |
| 74. | Middle East Asia Minor 1 | Pakistan: Sindh | AJ510081 | |
| 75. | Middle East Asia Minor 1 | Pakistan: Sindh | GU977268 | |
| 76. | Middle East Asia Minor 1 | Reunion: Petitelle | AJ877260 | |
| 77. | Middle East Asia Minor 1 | Saudi Arabia | GU086357 | |
| 78. | Middle East Asia Minor 2 | Reunion | AJ550177 | |
| 79. | New World | Belize | DQ130053 | |
| 80. | New World | Mexico | DQ130058 | |
| 81. | New World | Panama | DQ130060 | |
| 82. | New World 2 | Argentina | JF901837 | |
| 83. | New World 2 | Argentina | JF901844 | |
| 84. | Outgroup | GQ139515 | ||
| 85. | Outgroup | GU220055 | ||
| 86. | Outgroup | GU086362 | ||
| 87. | Outgroup | HQ457046 | ||
| 88. | Outgroup | GU220056 | ||
| 89. | Outgroup | AY057220 | ||
| 90. | Outgroup | AF418672 | ||
| 91. | Sub-Saharan Africa 1 | Uganda | AY057149 | |
| 92. | Sub-Saharan Africa 1 | Uganda: Mbarara | AY563674 | |
| 93. | Sub-Saharan Africa 1 | Uganda: Namulonge | AY903512 | |
| 94. | Sub-Saharan Africa 1 | Uganda | AY057179 | |
| 95. | Sub-Saharan Africa 2 | Uganda | AY057194 | |
| 96. | Sub-Saharan Africa 2 | Mali | AY827604 | |
| 97. | Sub-Saharan Africa 2 | Nigeria | AY827607 | |
| 98. | Sub-Saharan Africa 2 | Spain | GU086361 | |
| 99. | Sub-Saharan Africa 3 | Cameroon | AF344257 | |
| 100. | Sub-Saharan Africa 4 | Cameroon | AF344247 | |
| 101. | Sub-Saharan Africa 4 | Cameroon | AF344249 | |
| 102. | Sub-Saharan Africa 4 | Cameroon | AF344252 | |
| 103. | Uganda | Uganda | AY903553 | |
| 104. | Uganda | Uganda: Namulonge | AY903576 | |
| 105. | Uganda | Uganda: Namulonge | AY903577 | |
| 106. | Uganda | Uganda | AF418665 | |
| 107. | Asia II 11 | India | HM590147 | |
| 108. | Asia II 11 | India | HM590146 | |
| 109. | Africa | Cameroon: Maroua | EU760739 | |
| 110. | Sub-Saharan Africa 5 | Uganda: Mukono | AM040598 | |
| 111. | Japan 1 | Japan: Kagoshima | AB440785 | |
| 112. | Japan 1 | Japan: Kagoshima | AB440786 | |
| 113. | Japan 1 | Japan: Kagoshima | AB440790 | |
| 114. | Pakistan | Pakistan: Islamabad | KJ709461 | |
| 115. | Pakistan | Pakistan: Islamabad | KJ709451 | |
| 116. | Asia II 7 | India: Delhi | ||
| 117. | Asia II 7 | India: Delhi | ||
| 118. | Asia II 7 | India: Delhi | ||
| 119. | Asia II 7 | India: Delhi | ||
| 120. | Asia II 1 | India: Delhi | ||
| 121. | Asia II 1 | India: Delhi | ||
| 122. | Asia II 1 | India: Delhi | ||
| 123. | Asia II 1 | India: Delhi | ||
| 124. | Asia II 1 | India: Delhi | ||
| 125. | Asia II 1 | India: Delhi | ||
| 126. | Asia II 1 | India: Delhi | ||
| 127. | Asia II 1 | India: Delhi | ||
| 128. | Asia II 1 | India: Delhi | ||
| 129. | Asia II 1 | India: Delhi | ||
| 130. | Asia II 1 | India: Delhi | ||
| 131. | Asia II 1 | India: Delhi | ||
| 132. | Asia II 1 | India: Delhi | ||
| 133. | Asia II 1 | India: Delhi | ||
| 134. | Asia II 1 | India: Delhi | ||
| 135. | Asia II 1 | India: Delhi | ||
| 136. | Asia 1 | India: Delhi | ||
| 137. | Asia 1 | India: Delhi | ||
| 138. | Asia 1 | India: Delhi | ||
| 139. | Asia 1 | India: Delhi |
Sequences obtained from the current study.
Showing the GenBank Accession number of submitted reference sequences of endosymbionts.
| S.No. | Gene | Organism | GenBank Accession Number |
|---|---|---|---|
| 1. | 16S rRNA | KX161849 | |
| 2. | 16S rRNA | KX161850 | |
| 3. | 16S rRNA | KX161851 | |
| 4. | 16S rRNA | KX161852 | |
| 5. | 16S rRNA | KX161853 | |
| 6. | 16S rRNA | KX197216 | |
| 7. | 16S rRNA | KX197217 | |
| 8. | 16S rRNA | KX197218 | |
| 9. | 16S rRNA | KX197219 | |
| 10. | 16S rRNA | KX197220 | |
| 11. | 16S rRNA | KX197221 | |
| 12. | 16S rRNA | KX197222 | |
| 13. | 16S rRNA | KX197223 | |
| 14. | 16S rRNA | KX197224 | |
| 15. | 16S rRNA | KX197225 | |
| 16. | 16S rRNA | KX197226 | |
| 17. | 16S rRNA | KX197227 | |
| 18. | 16S rRNA | KX197228 | |
| 19. | 16S rRNA | KX197229 | |
| 20. | 16S rRNA | KX197230 | |
| 21. | 23S rRNA | KY630534 | |
| 22. | 23S rRNA | KY630535 | |
| 23. | 23S rRNA | KY630536 | |
| 24. | 23S rRNA | KY630537 |