Literature DB >> 29497351

Controlling Stochasticity in Epithelial-Mesenchymal Transition Through Multiple Intermediate Cellular States.

Catherine Ha Ta1, Qing Nie1, Tian Hong1.   

Abstract

Epithelial-mesenchymal transition (EMT) is an instance of cellular plasticity that plays critical roles in development, regeneration and cancer progression. Recent studies indicate that the transition between epithelial and mesenchymal states is a multi-step and reversible process in which several intermediate phenotypes might coexist. These intermediate states correspond to various forms of stem-like cells in the EMT system, but the function of the multi-step transition or the multiple stem cell phenotypes is unclear. Here, we use mathematical models to show that multiple intermediate phenotypes in the EMT system help to attenuate the overall fluctuations of the cell population in terms of phenotypic compositions, thereby stabilizing a heterogeneous cell population in the EMT spectrum. We found that the ability of the system to attenuate noise on the intermediate states depends on the number of intermediate states, indicating the stem-cell population is more stable when it has more sub-states. Our study reveals a novel advantage of multiple intermediate EMT phenotypes in terms of systems design, and it sheds light on the general design principle of heterogeneous stem cell population.

Entities:  

Keywords:  Noise attenuation; cellular plasticity; heterogeneous cell population; multi-step EMT; multiple intermediate phenotypes; stem cell dynamics

Year:  2016        PMID: 29497351      PMCID: PMC5828240          DOI: 10.3934/dcdsb.2016047

Source DB:  PubMed          Journal:  Discrete Continuous Dyn Syst Ser B        ISSN: 1531-3492            Impact factor:   1.327


  33 in total

1.  The effects of molecular noise and size control on variability in the budding yeast cell cycle.

Authors:  Stefano Di Talia; Jan M Skotheim; James M Bean; Eric D Siggia; Frederick R Cross
Journal:  Nature       Date:  2007-08-23       Impact factor: 49.962

2.  The heterogeneity and dynamic equilibrium of rat embryonic stem cells.

Authors:  Yan Shen; Cheng Shi; Wei Wei; Weidong Yu; Wenlin Li; Yang Yang; Jun Xu; Wenqin Ying; Xin Sui; Lingling Fang; Weiwei Lin; Huan Yang; Sheng Ding; Huan Shen; Yan Shi; Hongkui Deng
Journal:  Cell Res       Date:  2011-06-14       Impact factor: 25.617

3.  TGF-β-induced epithelial-to-mesenchymal transition proceeds through stepwise activation of multiple feedback loops.

Authors:  Jingyu Zhang; Xiao-Jun Tian; Hang Zhang; Yue Teng; Ruoyan Li; Fan Bai; Subbiah Elankumaran; Jianhua Xing
Journal:  Sci Signal       Date:  2014-09-30       Impact factor: 8.192

Review 4.  Snail1-driven plasticity of epithelial and mesenchymal cells sustains cancer malignancy.

Authors:  Josep Baulida; Antonio García de Herreros
Journal:  Biochim Biophys Acta       Date:  2015-06-04

Review 5.  Design principles of regulatory networks: searching for the molecular algorithms of the cell.

Authors:  Wendell A Lim; Connie M Lee; Chao Tang
Journal:  Mol Cell       Date:  2013-01-24       Impact factor: 17.970

6.  Transcriptome-wide noise controls lineage choice in mammalian progenitor cells.

Authors:  Hannah H Chang; Martin Hemberg; Mauricio Barahona; Donald E Ingber; Sui Huang
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

Review 7.  The basics of epithelial-mesenchymal transition.

Authors:  Raghu Kalluri; Robert A Weinberg
Journal:  J Clin Invest       Date:  2009-06       Impact factor: 14.808

8.  Coupling the modules of EMT and stemness: A tunable 'stemness window' model.

Authors:  Mohit Kumar Jolly; Dongya Jia; Marcelo Boareto; Sendurai A Mani; Kenneth J Pienta; Eshel Ben-Jacob; Herbert Levine
Journal:  Oncotarget       Date:  2015-09-22

9.  Exploring the contextual sensitivity of factors that determine cell-to-cell variability in receptor-mediated apoptosis.

Authors:  Suzanne Gaudet; Sabrina L Spencer; William W Chen; Peter K Sorger
Journal:  PLoS Comput Biol       Date:  2012-04-26       Impact factor: 4.475

10.  An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States.

Authors:  Tian Hong; Kazuhide Watanabe; Catherine Ha Ta; Alvaro Villarreal-Ponce; Qing Nie; Xing Dai
Journal:  PLoS Comput Biol       Date:  2015-11-10       Impact factor: 4.475

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  10 in total

1.  Modeling the effects of EMT-immune dynamics on carcinoma disease progression.

Authors:  Daniel R Bergman; Matthew K Karikomi; Min Yu; Qing Nie; Adam L MacLean
Journal:  Commun Biol       Date:  2021-08-18

2.  Inference and multiscale model of epithelial-to-mesenchymal transition via single-cell transcriptomic data.

Authors:  Yutong Sha; Shuxiong Wang; Peijie Zhou; Qing Nie
Journal:  Nucleic Acids Res       Date:  2020-09-25       Impact factor: 16.971

Review 3.  Investigating epithelial-to-mesenchymal transition with integrated computational and experimental approaches.

Authors:  Jianhua Xing; Xiao-Jun Tian
Journal:  Phys Biol       Date:  2019-03-07       Impact factor: 2.583

4.  Mean-Independent Noise Control of Cell Fates via Intermediate States.

Authors:  Christopher Rackauckas; Thomas Schilling; Qing Nie
Journal:  iScience       Date:  2018-04-11

5.  Combinatorial perturbation analysis reveals divergent regulations of mesenchymal genes during epithelial-to-mesenchymal transition.

Authors:  Kazuhide Watanabe; Nicholas Panchy; Shuhei Noguchi; Harukazu Suzuki; Tian Hong
Journal:  NPJ Syst Biol Appl       Date:  2019-06-14

6.  An enriched network motif family regulates multistep cell fate transitions with restricted reversibility.

Authors:  Yujie Ye; Xin Kang; Jordan Bailey; Chunhe Li; Tian Hong
Journal:  PLoS Comput Biol       Date:  2019-03-07       Impact factor: 4.475

7.  Integrative Transcriptomic Analysis Reveals a Multiphasic Epithelial-Mesenchymal Spectrum in Cancer and Non-tumorigenic Cells.

Authors:  Nicholas Panchy; Cassandra Azeredo-Tseng; Michael Luo; Natalie Randall; Tian Hong
Journal:  Front Oncol       Date:  2020-01-22       Impact factor: 6.244

8.  Inference of Intercellular Communications and Multilayer Gene-Regulations of Epithelial-Mesenchymal Transition From Single-Cell Transcriptomic Data.

Authors:  Yutong Sha; Shuxiong Wang; Federico Bocci; Peijie Zhou; Qing Nie
Journal:  Front Genet       Date:  2021-01-08       Impact factor: 4.599

9.  Exploring intermediate cell states through the lens of single cells.

Authors:  Adam L MacLean; Tian Hong; Qing Nie
Journal:  Curr Opin Syst Biol       Date:  2018-03-02

10.  A plausible accelerating function of intermediate states in cancer metastasis.

Authors:  Hanah Goetz; Juan R Melendez-Alvarez; Luonan Chen; Xiao-Jun Tian
Journal:  PLoS Comput Biol       Date:  2020-03-10       Impact factor: 4.475

  10 in total

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