Literature DB >> 29497022

Crystal structure of the Kelch domain of human NS1-binding protein at 1.98 Å resolution.

Lu Guo1, Yingfang Liu1.   

Abstract

NS1-binding protein (NS1-BP), which belongs to the Kelch protein superfamily, was first identified as a novel human 70 kDa protein that interacts with NS1 of Influenza A virus. It is involved in many cell functions, including pre-mRNA splicing, the ERK signalling pathway, the aryl hydrocarbon receptor (AHR) pathway, F-actin organization and protein ubiquitylation. However, the structure of NS1-BP is still unknown, which may impede functional studies. Here, the structure of the C-terminal Kelch domain of NS1-BP (NS1-BP-C; residues 330-642) was determined at 1.98 Å resolution. The Kelch domain adopts a highly symmetric six-bladed β-propeller fold structure. Each blade of the β-propeller is composed of four antiparallel β-strands. Comparison of the Kelch-domain structures of NS1-BP and its homologues showed that the Gly-Gly pair in β-strand B and the hydrophobic Trp residue in β-strand D are highly conserved, while the B-C loops in blades 2 and 6 are variable. This structure of the Kelch domain of NS1-BP extends the understanding of NS1-BP.

Entities:  

Keywords:  ERK signalling pathway; F-actin organization; Kelch domain; NS1-binding protein; X-ray crystallography; aryl hydrocarbon receptor (AHR) pathway; pre-mRNA splicing; protein ubiquitylation

Mesh:

Substances:

Year:  2018        PMID: 29497022      PMCID: PMC5947704          DOI: 10.1107/S2053230X18001577

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  15 in total

1.  Conserved solvent and side-chain interactions in the 1.35 Angstrom structure of the Kelch domain of Keap1.

Authors:  Lesa J Beamer; Xuchu Li; Christopher A Bottoms; Mark Hannink
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-09-28

2.  Structure of the Keap1:Nrf2 interface provides mechanistic insight into Nrf2 signaling.

Authors:  Shih-Ching Lo; Xuchu Li; Michael T Henzl; Lesa J Beamer; Mark Hannink
Journal:  EMBO J       Date:  2006-08-03       Impact factor: 11.598

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  The kelch protein NS1-BP interacts with alpha-enolase/MBP-1 and is involved in c-Myc gene transcriptional control.

Authors:  Giovanni Perconti; Arianna Ferro; Felice Amato; Patrizia Rubino; Davide Randazzo; Thorsten Wolff; Salvatore Feo; Agata Giallongo
Journal:  Biochim Biophys Acta       Date:  2007-09-26

5.  The aryl hydrocarbon receptor signaling pathway is modified through interactions with a Kelch protein.

Authors:  Elizabeth E Dunham; Emily A Stevens; Edward Glover; Christopher A Bradfield
Journal:  Mol Pharmacol       Date:  2006-03-31       Impact factor: 4.436

6.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  NS1-binding protein abrogates the elevation of cell viability by the influenza A virus NS1 protein in association with CRKL.

Authors:  Masaya Miyazaki; Hiroshi Nishihara; Hideki Hasegawa; Masato Tashiro; Lei Wang; Taichi Kimura; Mishie Tanino; Masumi Tsuda; Shinya Tanaka
Journal:  Biochem Biophys Res Commun       Date:  2013-11-09       Impact factor: 3.575

9.  Towards automated crystallographic structure refinement with phenix.refine.

Authors:  Pavel V Afonine; Ralf W Grosse-Kunstleve; Nathaniel Echols; Jeffrey J Headd; Nigel W Moriarty; Marat Mustyakimov; Thomas C Terwilliger; Alexandre Urzhumtsev; Peter H Zwart; Paul D Adams
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-03-16

10.  Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard.

Authors:  Thomas C Terwilliger; Paul D Adams; Randy J Read; Airlie J McCoy; Nigel W Moriarty; Ralf W Grosse-Kunstleve; Pavel V Afonine; Peter H Zwart; Li Wei Hung
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-05-15
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.