Literature DB >> 29492885

Viral Double-Stranded RNAs (dsRNAs) from Plants: Alternative Nucleic Acid Substrates for High-Throughput Sequencing.

Armelle Marais1, Chantal Faure2, Bernard Bergey2, Thierry Candresse2.   

Abstract

High-throughput sequencing (or next-generation sequencing-NGS) is an emerging technology that allows the detection of plant viruses without any prior knowledge. Various sequencing techniques and various templates can be used as substrate for NGS. This chapter describes an optimized protocol for the extraction of double-stranded RNAs (dsRNAs) from a wide range of plants and for their random amplification prior to NGS sequencing.

Keywords:  Diagnostic; Double-stranded (ds) RNA; High-throughput sequencing; Metagenomics; NGS; Virome

Mesh：

Substances：

Year:  2018        PMID： 29492885     DOI： 10.1007/978-1-4939-7683-6_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  12 in total

1.  Phytovirome Analysis of Wild Plant Populations: Comparison of Double-Stranded RNA and Virion-Associated Nucleic Acid Metagenomic Approaches.

Authors:  Yuxin Ma; Armelle Marais; Marie Lefebvre; Sébastien Theil; Laurence Svanella-Dumas; Chantal Faure; Thierry Candresse
Journal:  J Virol       Date:  2019-12-12       Impact factor: 5.103

2.  Identification of two novel putative satellite RNAs with hammerhead structures in the virome of French and Spanish carrot samples.

Authors:  B M Babalola; D Schönegger; C Faure; A Marais; A Fraile; F Garcia-Arenal; T Candresse
Journal:  Arch Virol       Date:  2022-07-20       Impact factor: 2.685

Review 3.  Recent Advances on Detection and Characterization of Fruit Tree Viruses Using High-Throughput Sequencing Technologies.

Authors:  Varvara I Maliogka; Angelantonio Minafra; Pasquale Saldarelli; Ana B Ruiz-García; Miroslav Glasa; Nikolaos Katis; Antonio Olmos
Journal:  Viruses       Date:  2018-08-17       Impact factor: 5.048

4.  dsRNA-Seq: Identification of Viral Infection by Purifying and Sequencing dsRNA.

Authors:  Carolyn J Decker; Halley R Steiner; Laura L Hoon-Hanks; James H Morrison; Kelsey C Haist; Alex C Stabell; Eric M Poeschla; Thomas E Morrison; Mark D Stenglein; Sara L Sawyer; Roy Parker
Journal:  Viruses       Date:  2019-10-14       Impact factor: 5.048

5.  Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves.

Authors:  Victor Golyaev; Thierry Candresse; Frank Rabenstein; Mikhail M Pooggin
Journal:  Sci Rep       Date:  2019-12-17       Impact factor: 4.379

6.  High throughput sequencing from Angolan citrus accessions discloses the presence of emerging CTV strains.

Authors:  Aderito Tomàs Pais da Cunha; Michela Chiumenti; Laurindo Chambula Ladeira; Raied Abou Kubaa; Giuliana Loconsole; Vitantonio Pantaleo; Angelantonio Minafra
Journal:  Virol J       Date:  2021-03-23       Impact factor: 4.099

7.  Novel Ampeloviruses Infecting Cassava in Central Africa and the South-West Indian Ocean Islands.

Authors:  Yves Kwibuka; Espoir Bisimwa; Arnaud G Blouin; Claude Bragard; Thierry Candresse; Chantal Faure; Denis Filloux; Jean-Michel Lett; François Maclot; Armelle Marais; Santatra Ravelomanantsoa; Sara Shakir; Hervé Vanderschuren; Sébastien Massart
Journal:  Viruses       Date:  2021-05-29       Impact factor: 5.048

8.  Grapevine virus T diversity as revealed by full-length genome sequences assembled from high-throughput sequence data.

Authors:  Shaheen Nourinejhad Zarghani; Jean Michel Hily; Miroslav Glasa; Armelle Marais; Thierry Wetzel; Chantal Faure; Emmanuelle Vigne; Amandine Velt; Olivier Lemaire; Jean Michel Boursiquot; Arnela Okic; Ana Belén Ruiz-Garcia; Antonio Olmos; Thierry Lacombe; Thierry Candresse
Journal:  PLoS One       Date:  2018-10-30       Impact factor: 3.240

9.  Molecular Viral Diagnosis and Sanitation of Yam Genetic Resources: Implications for Safe Yam Germplasm Exchange.

Authors:  Marie Umber; Denis Filloux; Suzia Gélabale; Rose-Marie Gomez; Armelle Marais; Séverine Gallet; Franciane Gamiette; Claudie Pavis; Pierre-Yves Teycheney
Journal:  Viruses       Date:  2020-09-29       Impact factor: 5.048

10.  Use of High-Throughput Sequencing and Two RNA Input Methods to Identify Viruses Infecting Tomato Crops.

Authors:  Ayoub Maachi; Covadonga Torre; Raquel N Sempere; Yolanda Hernando; Miguel A Aranda; Livia Donaire
Journal:  Microorganisms       Date:  2021-05-12
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