| Literature DB >> 29492228 |
Junfeng Zeng1, Xiaowei Yi2, Hao Liu1, Yi Yang1, Yuchen Duan1, Hua Chen1.
Abstract
OBJECTIVES: Single nucleotide polymorphisms in microRNAs (microRNA-196a2 rs11614913, microRNA-146a rs2910164, microRNA-149 rs2292832 and microRNA-499 rs3746444) have been inconsistently associated with risk for oral squamous cell cancer (OSCC). This meta-analysis aimed to assess the correlation between microRNA polymorphisms and susceptibility to OSCC.Entities:
Keywords: cancer biomarkers; meta-analysis; microRNAs; oral squamous cell cancer (OSCC); polymorphism
Year: 2018 PMID: 29492228 PMCID: PMC5823596 DOI: 10.18632/oncotarget.24211
Source DB: PubMed Journal: Oncotarget ISSN: 1949-2553
Figure 1Flow diagram of screening studies
Characteristics of the included studies on microRNA polymorphisms and risk of oral squamous cell cancer
| Reference | Country | Source of control | Case/Control | Genotype distribution | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| P for HWE | |||||||||||||||
| Case | Control | ||||||||||||||
| microRNA-196a2 rs11614913 C > T | |||||||||||||||
| C | T | CC | TC | TT | C | T | CC | TC | TT | ||||||
| Zhang E, 2017 | China | Hospital-based | 340/340 | 311 | 369 | 71 | 169 | 100 | 331 | 349 | 88 | 155 | 97 | 0.106 | |
| Miao L, 2016 | China | Hospital-based | 462/1550 | 452 | 472 | 112 | 228 | 122 | 1339 | 1761 | 292 | 755 | 503 | 0.796 | |
| Sushma PS,2015 | India | Not mentioned | 100/102 | 54 | 146 | 22 | 10 | 68 | 27 | 177 | 6 | 15 | 81 | 0.00028 | |
| Roy R, 2014 | India | Hospital-based | 451/448 | 623 | 279 | 218 | 187 | 46 | 652 | 244 | 242 | 168 | 38 | 0.25 | |
| Liu CJ, 2013 | Taiwan | Not mentioned | 315/92 | 275 | 355 | 64 | 147 | 104 | 88 | 96 | 26 | 36 | 30 | 0.04 | |
| Chu YH, 2012 | Taiwan | Hospital-based | 470/425 | 391 | 549 | 57 | 277 | 136 | 380 | 470 | 87 | 206 | 132 | 0.68 | |
| microRNA-146a rs2910164 G > C | |||||||||||||||
| G | C | GG | CG | CC | G | C | GG | CG | CC | ||||||
| Zhang E, 2017 | China | Hospital-based | 340/340 | 178 | 502 | 27 | 124 | 189 | 152 | 528 | 19 | 114 | 207 | 0.53 | |
| Miao L, 2016 | China | Hospital-based | 462/1548 | 536 | 388 | 154 | 228 | 80 | 1767 | 1329 | 497 | 773 | 278 | 0.46 | |
| Palmieri A, 2014 | Italy | Population-based | 337/1176 | 515 | 159 | 197 | 121 | 19 | 1730 | 622 | 647 | 436 | 93 | 0.10 | |
| Chu YH, 2012 | Taiwan | Hospital-based | 470/425 | 350 | 590 | 54 | 242 | 174 | 304 | 546 | 54 | 196 | 175 | 0.93 | |
| Chen CH, 2016 | Taiwan | Hospital-based | 512/668 | 383 | 641 | 71 | 241 | 200 | 499 | 837 | 103 | 293 | 272 | 0.10 | |
| microRNA-149 rs2292832 C > T | |||||||||||||||
| T | C | TT | TC | CC | T | C | TT | TC | CC | ||||||
| Miao L, 2016 | China | Hospital-based | 461/1548 | 645 | 277 | 226 | 193 | 42 | 2099 | 997 | 726 | 647 | 175 | 0.092 | |
| Sushma PS, 2015 | India | Not mentioned | 100/102 | 34 | 166 | 6 | 22 | 72 | 12 | 192 | 0 | 12 | 90 | 0.52 | |
| Chu YH, 2012 | Taiwan | Hospital-based | 470/425 | 778 | 162 | 345 | 88 | 37 | 714 | 136 | 315 | 84 | 26 | 4.84 | |
| microRNA-499 rs3746444 A > G | |||||||||||||||
| G | A | GG | GA | AA | G | A | GG | GA | AA | ||||||
| Zhang E, 2017 | China | Hospital-based | 340/340 | 180 | 500 | 31 | 118 | 191 | 135 | 545 | 12 | 111 | 217 | 0.633 | |
| Hou YY, 2015 | China, Taiwan | Hospital-based | 155/204 | 49 | 261 | 5 | 39 | 111 | 53 | 355 | 1 | 51 | 152 | 0.13 | |
| Chu YH, 2012 | China, Taiwan | Hospital-based | 470/425 | 143 | 797 | 12 | 119 | 339 | 72 | 778 | 3 | 66 | 356 | 0.97 | |
HWE: Hardy-Weinberg equilibrium
NOS scores of included studies
| Author | Year | Case | Control | Comparability | Exposure | Score | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Definition | Represent | Selection | Definition | Important factors | Other factors | Ascertain | Method | Non-response rate | |||
| Zhang E | 2017 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 6 |
| Miao L | 2016 | ★ | ★ | ★ | ★ | ★ | ★ | ☆ | ★ | ☆ | 7 |
| Sushma PS | 2015 | ☆ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 5 |
| Hou, YY | 2015 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 6 |
| Roy, R | 2014 | ☆ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 5 |
| Liu CJ | 2013 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 5 |
| Song X | 2013 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ★ | 7 |
| Chu YH | 2012 | ☆ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ★ | 6 |
| Palmieri a | 2014 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 6 |
| Chen CH | 2016 | ★ | ★ | ☆ | ★ | ★ | ★ | ☆ | ★ | ☆ | 6 |
| Christensen BC | 2010 | ★ | ★ | ★ | ★ | ★ | ★ | ☆ | ★ | ☆ | 7 |
NOS: Newcastle-Ottawa Scale
Figure 2Forest plot of the relationship between the TT genotype of microRNA-196a2 and OSCC risk under TT vs TC+CC
Figure 3Forest plot of the relationship between the CC genotype of microRNA-146a and OSCC risk under CC vs GG+CG
Summary of tests for association between polymorphisms in four microRNAs and OSCC risk, of publication bias, and of included study number, under all genetic models of four miRNAs
| Comparison | Test of association | Publication bias | Number | |||||
|---|---|---|---|---|---|---|---|---|
| ORs | 95% CIs | PEgger | PBegg | Cases | Controls | |||
| microRNA-196a2 rs11614913 C > T | ||||||||
| T vs C | 0.984 | 0.903∼1.073 | 0.719 | 0.803 | 0.707 | 4276 | 5914 | |
| TT vs CC | 0.974 | 0.817∼1.161 | 0.766 | 0.992 | 1.000 | 952 | 1566 | |
| TC vs CC | 1.159 | 0.999∼1.345 | 0.051 | 0.838 | 0.707 | 1759 | 2076 | |
| TT + TC vs CC | 1.105 | 0.937∼1.10 | 0.710 | 0.926 | 0.902 | 2732 | 3847 | |
| TT vs TC + CC | 0.877 | 0.763∼1.007 | 0.063 | 0.696 | 0.707 | 1823 | 2865 | |
| microRNA-146a rs2910164 G > C | ||||||||
| G vs C | 0.946 | 0.877∼1.021 | 0.153 | 0.259 | 0.452 | 4936 | 10298 | |
| GG vs CC | 0.921 | 0.776∼1.092 | 0.344 | 0.258 | 0.707 | 1386 | 2988 | |
| GC vs CC | 1.008 | 0.890∼1.141 | 0.900 | 0.818 | 0.707 | 1785 | 4067 | |
| GG + GC vs CC | 1.000 | 0.896∼1.117 | 0.996 | 0.951 | 0.764 | 2793 | 5484 | |
| GG vs CC + GC | 0.874 | 0.768∼0.994 | 0.041 | 0.100 | 0.221 | 2468 | 5149 | |
| microRNA-149 rs2292832 C > T | ||||||||
| T vs C | 1.098 | 0.963∼1.252 | 0.161 | 0.494 | 1.000 | 2062 | 4150 | |
| TT vs CC | 1.172 | 0.875∼1.569 | 0.287 | 0.636 | 1.000 | 728 | 1332 | |
| TC vs CC | 1.195 | 0.896∼1.593 | 0.225 | 0.850 | 1.000 | 454 | 1034 | |
| TT + TC vs CC | 1.128 | 0.923∼1.389 | 0.238 | 0.480 | 0.734 | 1356 | 2410 | |
| TT vs TC + CC | 1.070 | 0.903∼1.267 | 0.437 | 0.396 | 1.000 | 1031 | 2075 | |
| microRNA-499 rs3746444 A > G | ||||||||
| G vs A | 1.570 | 1.318∼1.871 | 0.000 | 0.802 | 1.000 | 1930 | 1938 | |
| GG vs AA | 3.430 | 1.914∼6.146 | 0.000 | 0.023 | 0.296 | 689 | 741 | |
| GA vs AA | 1.407 | 1.142∼1.733 | 0.001 | 0.668 | 1.000 | 917 | 953 | |
| GG + GA vs AA | 1.484 | 1.253∼1.758 | 0.000 | 0.621 | 0.734 | 1290 | 1304 | |
| GG vs GA + AA | 3.165 | 1.777∼5.637 | 0.000 | 0.061 | 0.296 | 965 | 969 | |
PEgger: P value for Egger’s test. PBegg: P value for Begg’s test. No significant publication bias is observed if PEgger > 0.05 and PBegg > 0.05.
Figure 4Forest plot showing a significant association between the microRNA-499 polymorphism and OSCC risk under various genetic models
(A) Allele model: G vs A, (B) Codominant model: GA vs AA, (C) Dominant model, GG+GA vs AA (D) Recessive model: GG vs GA+AA.
Figure 5Sensitivity analysis conducted by sequentially eliminating one study at a time to examine the relationship between the TT genotype of miR-196a2 (A), the CC genotype of miR-146a (B) and OSCC risk.
The search strategy for each database
| Database | Search strategy |
|---|---|
| PubMed | ((((((miRNA genes) OR microRNA) OR miRNA)) AND ((((((((OSCC) OR oral squamous cell carcinoma) OR mouth neoplasm) OR oral cancer) OR oral carcinoma) OR oral tumor))))) AND ((((((((((((((Variants) OR SNP) OR polymorphisms) OR mutation) OR allele) OR genotype) OR Susceptibility) OR Variant) OR SNPs) OR polymorphism) OR mutations) OR alleles) OR genotypes) OR Susceptibilities) |
| Embase | (exp microRNA AND (exp genetic polymorphism/ or exp single nucleotide polymorphism/ or exp DNA polymorphism) AND exp mouth squamous cell carcinoma)) |
| Web of science | TOPIC: (miRNA) OR TOPIC: (microRNA) OR TOPIC: (microRNAs) OR TOPIC: (miRNA) AND TOPIC: (OSCC) OR TOPIC: (oral squamous cell carcinoma) OR TOPIC: (mouth neoplasm) OR TOPIC: (oral cancer) OR TOPIC: (oral carcinoma) OR TOPIC: (oral tumor) AND TOPIC: (Variants) OR TOPIC: (SNP) OR TOPIC: (polymorphism) OR TOPIC: (mutation) OR TOPIC: (allele) OR TOPIC: (genotype) |
| SCOPUS | ((TITLE-ABS-KEY (mirna) OR TITLE-ABS-KEY (microrna) OR TITLE-ABS-KEY (micrornas) OR TITLE-ABS-KEY (mirnas))) AND ((TITLE-ABS-KEY (oscc) OR TITLE-ABS-KEY (oral AND squamous AND cell AND carcinoma) OR TITLE-ABS-KEY (mouth AND neoplasm) OR TITLE-ABS-KEY (oral AND cancer) OR TITLE-ABS-KEY (oral AND carcinoma) OR TITLE-ABS-KEY (oral AND tumor))) AND ((TITLE-ABS-KEY (variants) OR TITLE-ABS-KEY (snp) OR TITLE-ABS-KEY (polymorphisms) OR TITLE-ABS-KEY (mutation) OR TITLE-ABS-KEY (allele) OR TITLE-ABS-KEY (genotype))) |