Literature DB >> 29491494

Transcriptional patterns identify resource controls on the diazotroph Trichodesmium in the Atlantic and Pacific oceans.

Mónica Rouco1,2, Kyle R Frischkorn1,2, Sheean T Haley1, Harriet Alexander3, Sonya T Dyhrman4,5.   

Abstract

The N2-fixing cyanobacterium Trichodesmium is intensely studied because of the control this organism exerts over the cycling of carbon and nitrogen in the low nutrient ocean gyres. Although iron (Fe) and phosphorus (P) bioavailability are thought to be major drivers of Trichodesmium distributions and activities, identifying resource controls on Trichodesmium is challenging, as Fe and P are often organically complexed and their bioavailability to a single species in a mixed community is difficult to constrain. Further, Fe and P geochemistries are linked through the activities of metalloenzymes, such as the alkaline phosphatases (APs) PhoX and PhoA, which are used by microbes to access dissolved organic P (DOP). Here we identified significant correlations between Trichodesmium-specific transcriptional patterns in the North Atlantic (NASG) and North Pacific Subtropical Gyres (NPSG) and patterns in Fe and P biogeochemistry, with the relative enrichment of Fe stress markers in the NPSG, and P stress markers in the NASG. We also observed the differential enrichment of Fe-requiring PhoX transcripts in the NASG and Fe-insensitive PhoA transcripts in the NPSG, suggesting that metalloenzyme switching may be used to mitigate Fe limitation of DOP metabolism in Trichodesmium. This trait may underpin Trichodesmium success across disparate ecosystems.

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Year:  2018        PMID: 29491494      PMCID: PMC5956094          DOI: 10.1038/s41396-018-0087-z

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  45 in total

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Authors:  Asunción Martínez; Marcia S Osburne; Adrian K Sharma; Edward F DeLong; Sallie W Chisholm
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Review 3.  Marine microorganisms and global nutrient cycles.

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4.  Fast gapped-read alignment with Bowtie 2.

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Authors:  E E Kim; H W Wyckoff
Journal:  J Mol Biol       Date:  1991-03-20       Impact factor: 5.469

6.  A molecular assessment of the iron stress response in the two phylogenetic clades of Trichodesmium.

Authors:  P Dreux Chappell; Eric A Webb
Journal:  Environ Microbiol       Date:  2009-08-25       Impact factor: 5.491

7.  Circadian rhythm of nitrogenase gene expression in the diazotrophic filamentous nonheterocystous cyanobacterium Trichodesmium sp. strain IMS 101.

Authors:  Y B Chen; B Dominic; M T Mellon; J P Zehr
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

8.  Molecular analysis of the phosphorus starvation response in Trichodesmium spp.

Authors:  Elizabeth D Orchard; Eric A Webb; Sonya T Dyhrman
Journal:  Environ Microbiol       Date:  2009-06-25       Impact factor: 5.491

9.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Authors:  Bo Li; Colin N Dewey
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.307

10.  Mining genomes of marine cyanobacteria for elements of zinc homeostasis.

Authors:  James P Barnett; Andrew Millard; Amira Z Ksibe; David J Scanlan; Ralf Schmid; Claudia Andrea Blindauer
Journal:  Front Microbiol       Date:  2012-04-11       Impact factor: 5.640

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  5 in total

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Journal:  ISME J       Date:  2022-08-25       Impact factor: 11.217

2.  New insights into the distributions of nitrogen fixation and diazotrophs revealed by high-resolution sensing and sampling methods.

Authors:  Weiyi Tang; Elena Cerdán-García; Hugo Berthelot; Despo Polyviou; Seaver Wang; Alison Baylay; Hannah Whitby; Hélène Planquette; Matthew Mowlem; Julie Robidart; Nicolas Cassar
Journal:  ISME J       Date:  2020-06-24       Impact factor: 10.302

3.  Longitudinal and Vertical Variations of Dissolved Labile Phosphoric Monoesters and Diesters in the Subtropical North Pacific.

Authors:  Tamaha Yamaguchi; Mitsuhide Sato; Fuminori Hashihama; Haruka Kato; Takanori Sugiyama; Hiroshi Ogawa; Kazutaka Takahashi; Ken Furuya
Journal:  Front Microbiol       Date:  2021-01-20       Impact factor: 5.640

4.  Transcriptional responses of Trichodesmium to natural inverse gradients of Fe and P availability.

Authors:  E Cerdan-Garcia; A Baylay; D Polyviou; E M S Woodward; L Wrightson; C Mahaffey; M C Lohan; C M Moore; T S Bibby; J C Robidart
Journal:  ISME J       Date:  2021-11-24       Impact factor: 10.302

5.  Nutrient regulation of biological nitrogen fixation across the tropical western North Pacific.

Authors:  Zuozhu Wen; Thomas J Browning; Yihua Cai; Rongbo Dai; Ruifeng Zhang; Chuanjun Du; Ruotong Jiang; Wenfang Lin; Xin Liu; Zhimian Cao; Haizheng Hong; Minhan Dai; Dalin Shi
Journal:  Sci Adv       Date:  2022-02-04       Impact factor: 14.136

  5 in total

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