Literature DB >> 29489744

Picky: a simple online PRM and SRM method designer for targeted proteomics.

Henrik Zauber1, Marieluise Kirchner2, Matthias Selbach1.   

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Year:  2018        PMID： 29489744     DOI： 10.1038/nmeth.4607

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  6 in total

Review 1.  Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions.

Authors:  Paola Picotti; Ruedi Aebersold
Journal:  Nat Methods       Date:  2012-05-30       Impact factor: 28.547

2.  Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.

Authors:  Brendan MacLean; Daniela M Tomazela; Nicholas Shulman; Matthew Chambers; Gregory L Finney; Barbara Frewen; Randall Kern; David L Tabb; Daniel C Liebler; Michael J MacCoss
Journal:  Bioinformatics       Date:  2010-02-09       Impact factor: 6.937

3.  Parallel reaction monitoring for high resolution and high mass accuracy quantitative, targeted proteomics.

Authors:  Amelia C Peterson; Jason D Russell; Derek J Bailey; Michael S Westphall; Joshua J Coon
Journal:  Mol Cell Proteomics       Date:  2012-08-03       Impact factor: 5.911

Review 4.  Advances in targeted proteomics and applications to biomedical research.

Authors:  Tujin Shi; Ehwang Song; Song Nie; Karin D Rodland; Tao Liu; Wei-Jun Qian; Richard D Smith
Journal:  Proteomics       Date:  2016-08       Impact factor: 3.984

5.  Building ProteomeTools based on a complete synthetic human proteome.

Authors:  Daniel P Zolg; Mathias Wilhelm; Karsten Schnatbaum; Johannes Zerweck; Tobias Knaute; Bernard Delanghe; Derek J Bailey; Siegfried Gessulat; Hans-Christian Ehrlich; Maximilian Weininger; Peng Yu; Judith Schlegl; Karl Kramer; Tobias Schmidt; Ulrike Kusebauch; Eric W Deutsch; Ruedi Aebersold; Robert L Moritz; Holger Wenschuh; Thomas Moehring; Stephan Aiche; Andreas Huhmer; Ulf Reimer; Bernhard Kuster
Journal:  Nat Methods       Date:  2017-01-30       Impact factor: 28.547

6.  Human SRMAtlas: A Resource of Targeted Assays to Quantify the Complete Human Proteome.

Authors:  Ulrike Kusebauch; David S Campbell; Eric W Deutsch; Caroline S Chu; Douglas A Spicer; Mi-Youn Brusniak; Joseph Slagel; Zhi Sun; Jeffrey Stevens; Barbara Grimes; David Shteynberg; Michael R Hoopmann; Peter Blattmann; Alexander V Ratushny; Oliver Rinner; Paola Picotti; Christine Carapito; Chung-Ying Huang; Meghan Kapousouz; Henry Lam; Tommy Tran; Emek Demir; John D Aitchison; Chris Sander; Leroy Hood; Ruedi Aebersold; Robert L Moritz
Journal:  Cell       Date:  2016-07-21       Impact factor: 41.582
  6 in total
  12 in total

1.  Targeted Quantitative Proteomic Approach for High-Throughput Quantitative Profiling of Small GTPases in Brain Tissues of Alzheimer's Disease Patients.

Authors:  Ming Huang; Martin Darvas; C Dirk Keene; Yinsheng Wang
Journal:  Anal Chem       Date:  2019-09-10       Impact factor: 6.986

2.  The guanine nucleotide exchange factor VAV3 participates in ERBB4-mediated cancer cell migration.

Authors:  Veera K Ojala; Anna M Knittle; Peppi Kirjalainen; Johannes A M Merilahti; Maarit Kortesoja; Denis Tvorogov; Katri Vaparanta; Shujun Lin; Jürgen Kast; Arto T Pulliainen; Kari J Kurppa; Klaus Elenius
Journal:  J Biol Chem       Date:  2020-06-19       Impact factor: 5.157

3.  Rapidly Assessing the Quality of Targeted Proteomics Experiments through Monitoring Stable-Isotope Labeled Standards.

Authors:  Bryson C Gibbons; Thomas L Fillmore; Yuqian Gao; Ronald J Moore; Tao Liu; Ernesto S Nakayasu; Thomas O Metz; Samuel H Payne
Journal:  J Proteome Res       Date:  2018-12-19       Impact factor: 4.466

4.  Quantitative Detection of Protein Splice Variants by Selected Reaction Monitoring (SRM) Mass Spectrometry.

Authors:  Alexander Schmidt; Dietmar Schreiner
Journal:  Methods Mol Biol       Date:  2022

5.  MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides.

Authors:  Christoph Wichmann; Florian Meier; Sebastian Virreira Winter; Andreas-David Brunner; Jürgen Cox; Matthias Mann
Journal:  Mol Cell Proteomics       Date:  2019-02-12       Impact factor: 5.911

6.  Purple: A Computational Workflow for Strategic Selection of Peptides for Viral Diagnostics Using MS-Based Targeted Proteomics.

Authors:  Johanna Lechner; Felix Hartkopf; Pauline Hiort; Andreas Nitsche; Marica Grossegesse; Joerg Doellinger; Bernhard Y Renard; Thilo Muth
Journal:  Viruses       Date:  2019-06-08       Impact factor: 5.048

7.  Proteomic Profiling of the Liver, Hepatic Lymph Nodes, and Spleen of Buffaloes Infected with Fasciola gigantica.

Authors:  Rui-Si Hu; Fu-Kai Zhang; Hany M Elsheikha; Qiao-Ni Ma; Muhammad Ehsan; Quan Zhao; Xing-Quan Zhu
Journal:  Pathogens       Date:  2020-11-24

8.  Sequential phosphoproteomics and N-glycoproteomics of plasma-derived extracellular vesicles.

Authors:  Hillary Andaluz Aguilar; Anton B Iliuk; I-Hsuan Chen; W Andy Tao
Journal:  Nat Protoc       Date:  2019-12-20       Impact factor: 17.021

9.  Perspective on Proteomics for Virus Detection in Clinical Samples.

Authors:  Marica Grossegesse; Felix Hartkopf; Andreas Nitsche; Lars Schaade; Joerg Doellinger; Thilo Muth
Journal:  J Proteome Res       Date:  2020-10-22       Impact factor: 4.466

10.  Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of Down Syndrome.

Authors:  Bruno Pinto; Giovanni Morelli; Mohit Rastogi; Annalisa Savardi; Amos Fumagalli; Andrea Petretto; Martina Bartolucci; Emilio Varea; Tiziano Catelani; Andrea Contestabile; Laura E Perlini; Laura Cancedda
Journal:  Neuron       Date:  2020-10-06       Impact factor: 17.173
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