Literature DB >> 29482119

eTRIKS platform: Conception and operation of a highly scalable cloud-based platform for translational research and applications development.

Justin Bussery1, Leslie-Alexandre Denis1, Benjamin Guillon1, Pengfeï Liu1, Gino Marchetti2, Ghita Rahal1.   

Abstract

We describe the genesis, design and evolution of a computing platform designed and built to improve the success rate of biomedical translational research. The eTRIKS project platform was developed with the aim of building a platform that can securely host heterogeneous types of data and provide an optimal environment to run tranSMART analytical applications. Many types of data can now be hosted, including multi-OMICS data, preclinical laboratory data and clinical information, including longitudinal data sets. During the last two years, the platform has matured into a robust translational research knowledge management system that is able to host other data mining applications and support the development of new analytical tools.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Keywords:  Analysis; Authentication; Cloud; Computing; Hosting; Knowledge management; Platform; Security; Storage; Translational research; Web application; eTRIKS; tranSMART

Mesh:

Year:  2018        PMID: 29482119     DOI: 10.1016/j.compbiomed.2018.02.006

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  3 in total

1.  Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.

Authors:  Wei Gu; Reha Yildirimman; Emmanuel Van der Stuyft; Denny Verbeeck; Sascha Herzinger; Venkata Satagopam; Adriano Barbosa-Silva; Reinhard Schneider; Bodo Lange; Hans Lehrach; Yike Guo; David Henderson; Anthony Rowe
Journal:  BMC Bioinformatics       Date:  2019-04-01       Impact factor: 3.169

2.  Cardiovascular RNA markers and artificial intelligence may improve COVID-19 outcome: a position paper from the EU-CardioRNA COST Action CA17129.

Authors:  Lina Badimon; Emma L Robinson; Amela Jusic; Irina Carpusca; Leon J deWindt; Costanza Emanueli; Péter Ferdinandy; Wei Gu; Mariann Gyöngyösi; Matthias Hackl; Kanita Karaduzovic-Hadziabdic; Mitja Lustrek; Fabio Martelli; Eric Nham; Ines Potočnjak; Venkata Satagopam; Reinhard Schneider; Thomas Thum; Yvan Devaux
Journal:  Cardiovasc Res       Date:  2021-07-07       Impact factor: 10.787

3.  Rethinking the Meaning of Cloud Computing for Health Care: A Taxonomic Perspective and Future Research Directions.

Authors:  Fangjian Gao; Scott Thiebes; Ali Sunyaev
Journal:  J Med Internet Res       Date:  2018-07-11       Impact factor: 5.428

  3 in total

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