Literature DB >> 29477092

Evaluation of three statistical prediction models for forensic age prediction based on DNA methylation.

Inge Smeers1, Ronny Decorte2, Wim Van de Voorde2, Bram Bekaert3.   

Abstract

DNA methylation is a promising biomarker for forensic age prediction. A challenge that has emerged in recent studies is the fact that prediction errors become larger with increasing age due to interindividual differences in epigenetic ageing rates. This phenomenon of non-constant variance or heteroscedasticity violates an assumption of the often used method of ordinary least squares (OLS) regression. The aim of this study was to evaluate alternative statistical methods that do take heteroscedasticity into account in order to provide more accurate, age-dependent prediction intervals. A weighted least squares (WLS) regression is proposed as well as a quantile regression model. Their performances were compared against an OLS regression model based on the same dataset. Both models provided age-dependent prediction intervals which account for the increasing variance with age, but WLS regression performed better in terms of success rate in the current dataset. However, quantile regression might be a preferred method when dealing with a variance that is not only non-constant, but also not normally distributed. Ultimately the choice of which model to use should depend on the observed characteristics of the data.
Copyright © 2018 Elsevier B.V. All rights reserved.

Keywords:  DNA methylation; Forensic age prediction; Statistical regression modelling

Mesh:

Substances:

Year:  2018        PMID: 29477092     DOI: 10.1016/j.fsigen.2018.02.008

Source DB:  PubMed          Journal:  Forensic Sci Int Genet        ISSN: 1872-4973            Impact factor:   4.882


  6 in total

1.  DNA methylation levels and telomere length in human teeth: usefulness for age estimation.

Authors:  Ana Belén Márquez-Ruiz; Lucas González-Herrera; Juan de Dios Luna; Aurora Valenzuela
Journal:  Int J Legal Med       Date:  2020-01-02       Impact factor: 2.686

2.  MapReduce-Based Parallel Genetic Algorithm for CpG-Site Selection in Age Prediction.

Authors:  Zahra Momeni; Mohammad Saniee Abadeh
Journal:  Genes (Basel)       Date:  2019-11-25       Impact factor: 4.096

Review 3.  DNA methylation aging clocks: challenges and recommendations.

Authors:  Christopher G Bell; Robert Lowe; Peter D Adams; Andrea A Baccarelli; Stephan Beck; Jordana T Bell; Brock C Christensen; Vadim N Gladyshev; Bastiaan T Heijmans; Steve Horvath; Trey Ideker; Jean-Pierre J Issa; Karl T Kelsey; Riccardo E Marioni; Wolf Reik; Caroline L Relton; Leonard C Schalkwyk; Andrew E Teschendorff; Wolfgang Wagner; Kang Zhang; Vardhman K Rakyan
Journal:  Genome Biol       Date:  2019-11-25       Impact factor: 13.583

4.  Male-specific age estimation based on Y-chromosomal DNA methylation.

Authors:  Athina Vidaki; Diego Montiel González; Benjamin Planterose Jiménez; Manfred Kayser
Journal:  Aging (Albany NY)       Date:  2021-03-11       Impact factor: 5.682

5.  Chronological Age Prediction: Developmental Evaluation of DNA Methylation-Based Machine Learning Models.

Authors:  Haoliang Fan; Qiqian Xie; Zheng Zhang; Junhao Wang; Xuncai Chen; Pingming Qiu
Journal:  Front Bioeng Biotechnol       Date:  2022-01-24

6.  DNA Methylation Biomarkers-Based Human Age Prediction Using Machine Learning.

Authors:  Atef Zaguia; Deepak Pandey; Sandeep Painuly; Saurabh Kumar Pal; Vivek Kumar Garg; Neelam Goel
Journal:  Comput Intell Neurosci       Date:  2022-01-24
  6 in total

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