| Literature DB >> 29473320 |
Ye Zhang1, Yin-Long Yang1,2,3,4,5, Fang-Lin Zhang1,2,3, Xiao-Hong Liao1,2,3, Zhi-Min Shao1,2,3,4,5, Da-Qiang Li1,2,3,4,5.
Abstract
Emerging evidence shows that ring finger protein 144A (RNF144A), a poorly characterized member of the Ring-between-Ring (RBR) family of E3 ubiquitin ligases, is a potential tumor suppressor gene. However, its regulatory mechanism in breast cancer remains undefined. Here, we report that RNF144A promoter contains a putative CpG island and the methylation levels of RNF144A promoter are higher in primary breast tumors than those in normal breast tissues. Consistently, RNF144A promoter methylation levels are associated with its transcriptional silencing in breast cancer cells, and treatment with DNA methylation inhibitor 5-Aza-2-deoxycytidine (AZA) reactivates RNF144A expression in cells with RNF144A promoter hypermethylation. Furthermore, genetic knockdown or pharmacological inhibition of endogenous methyl-CpG-binding domain 4 (MBD4) results in increased RNF144A expression. These findings suggest that RNF144A is epigenetically silenced in breast cancer cells by promoter hypermethylation and MBD4.Entities:
Keywords: Breast cancer; DNA methylation; MBD4; RNF144A; epigenetic regulation
Mesh:
Substances:
Year: 2018 PMID: 29473320 PMCID: PMC5911569 DOI: 10.1002/cam4.1324
Source DB: PubMed Journal: Cancer Med ISSN: 2045-7634 Impact factor: 4.452
Characterization of clinicopathological features of 30 primary breast cancer patients
| Clinicopathological features | No. of patients | Percentage (%) |
|---|---|---|
| Age (31–77 years, 51.5 ± 10.12 years) | ||
| ≦50 | 20 | 66.7 |
| >50 | 10 | 33.3 |
| Menopausal status | ||
| Premenopausal | 21 | 70 |
| Postmenopausal | 9 | 30 |
| Tumor size | ||
| ≦2 cm | 16 | 53.3 |
| >2 cm | 14 | 46.7 |
| Lymph node status | ||
| Negative | 15 | 50 |
| Positive | 15 | 50 |
| Grade | ||
| I‐II | 20 | 66.7 |
| III | 10 | 33.3 |
| ER status | ||
| Negative | 21 | 70 |
| Positive | 9 | 30 |
| PR status | ||
| Negative | 22 | 73.3 |
| Positive | 8 | 26.7 |
| HER2 status | ||
| Negative | 20 | 66.7 |
| Positive | 10 | 33.3 |
| Clinical stage (TNM) | ||
| I‐II | 23 | 76.7 |
| III | 7 | 23.3 |
Figure 1RNF144A promoter contains a putative CpG island. (A‐B) Alteration frequency of RNF144A gene mutation (A) and copy number deletion (B) in human breast cancer at the cBioPortal for Cancer Genomics. (C‐D) Predication of CpG islands at the promoter region of RNF144A gene (−1000 to +100) using the MethPrimer software (C) and the CpG plot program (D).
Figure 2The methylation levels of RNF144A promoter are increased in breast tumors. (A‐B) Analysis of the methylation levels of promoter in normal and breast cancer tissues at The Cancer Methylome System (A). This database includes 10 normal breast samples, 41 breast cancer cell lines, and 77 breast tumor samples. The red arrow stands for methylation pattern of RNF144A gene. Methylation intensities for promoter regions of genes are shown using a red gradient heatmap. A white/green box on the side of gene symbol shows the promoter regions of this particular gene with or without CpG island(s). Gene promoter containing CpG island (s) is indicated in green 26. Corresponding quantitative results are shown in B. N indicates normal breast tissues (n = 10); T indicates breast tumors (n = 77). (C) Schematic diagram of pyrosequencing of promoter regions. The transcription starting site (TSS) was marked as +1. The promoter regions of RNF144A which contain the putative CpG island (R1: −131 to −72; R2: +24 to +70) were amplified by PCR and then subjected to pyrosequencing. (D) Pyrosequencing analysis of the methylation levels at two separate regions (R) (R1 and R2) of the promoter in 30 pairs of breast cancer specimens and matched adjacent noncancerous breast tissues. N indicates normal breast tissues; T indicates breast tumors. (E) Analysis of DNA methylation levels in regions 1 (R1) and 2 (R2) of promoter in TNBC (n = 12) and non‐TNBC (n = 18) breast cancer specimens from 30 breast cancer patients as mentioned above in D. (F) qPCR analysis of RNF144A mRNA levels in TNBC (n = 12) and non‐TNBC (n = 18) breast cancer specimens from 30 breast cancer patients.
Figure 3Promoter hypermethylation is involved in transcriptional silencing of RNF144A in breast cancer cells. (A) The methylation levels of RNF144A promoter in normal epithelial cell line HBL100 and five representative breast cancer cell lines. (B) qPCR analysis of RNF144A mRNA levels in HBL100 and five breast cancer cell lines. Data are shown as mean ± SD. (C–D) Cells were treated with DNA methylation inhibitor AZA at the indicated doses for 4 d and subjected to qPCR (C) and immunoblotting (D) analysis of RNF144A mRNA and protein levels, respectively. Data are presented as mean ± SD in C.
Figure 4MBD4 transcriptionally represses RNF144A expression in breast cancer cells. (A‐B) MDA‐MB‐231 cells stably expressing shNC and shMBD4 were subjected to immunoblotting (A) and qPCR (B) analysis of RNF144A expression levels. (C) MDA‐MB‐231 cells were treated with DMSO or 200 nmol/L Wortmannin for the indicated times and then subjected to immunoblotting analysis with the indicated antibodies. (D) MDA‐MB‐231 cells were treated with DMSO or 200 nmol/L Wortmannin for 24 h and analyzed by qPCR analysis of RNF144A mRNA levels. (E) The correlation between the expression levels of MBD4 and RNF144A in breast cancer patients in TCGA database.