| Literature DB >> 29472762 |
Anna M Jażdżewska1, Laure Corbari2, Amy Driskell3, Inmaculada Frutos4, Charlotte Havermans5,6, Ed Hendrycks7, Lauren Hughes8, Anne-Nina Lörz4, Anne Helene S Tandberg9, Wim Vader10, Saskia Brix11.
Abstract
Amphipods constitute an abundant part of Icelandic deep-sea zoobenthos yet knowledge of the diversity of this fauna, particularly at the molecular level, is scarce. The present work aims to use molecular methods to investigate genetic variation of the Amphipoda sampled during two IceAGE collecting expeditions. The mitochondrial cytochrome oxidase subunit 1 (COI) of 167 individuals originally assigned to 75 morphospecies was analysed. These targeted morhospecies were readily identifiable by experts using light microscopy and representative of families where there is current ongoing taxonomic research. The study resulted in 81 Barcode Identity Numbers (BINs) (of which >90% were published for the first time), while Automatic Barcode Gap Discovery revealed the existence of 78 to 83 Molecular Operational Taxonomic Units (MOTUs). Six nominal species (Rhachotropis helleri, Arrhis phyllonyx, Deflexilodes tenuirostratus, Paroediceros propinquus, Metopa boeckii, Astyra abyssi) appeared to have a molecular variation higher than the 0.03 threshold of both p-distance and K2P usually used for amphipod species delineation. Conversely, two Oedicerotidae regarded as separate morphospecies clustered together with divergences in the order of intraspecific variation. The incongruence between the BINs associated with presently identified species and the publicly available data of the same taxa was observed in case of Paramphithoe hystrix and Amphilochus manudens. The findings from this research project highlight the necessity of supporting molecular studies with thorough morphology species analyses.Entities:
Keywords: Amphipoda; COI barcoding; North Atlantic; deep sea
Year: 2018 PMID: 29472762 PMCID: PMC5810104 DOI: 10.3897/zookeys.731.19931
Source DB: PubMed Journal: Zookeys ISSN: 1313-2970 Impact factor: 1.546
Figure 1.Sampling stations. Depth contours are the following: 500 m, 1000 m, 1500 m, 2000 m, 2500 m, 3000 m. Station details are in Suppl. material 1.
Figure 2.Neighbour-joining (NJ) tree of COI sequences (Suppl. material 1) based on Kimura 2-parameter. Triangles indicate the relative number of individuals studied (height) and sequence divergence (width). The asterisk (*) symbolizes taxa having already published sequences in BOLD/GenBank identified to species level. The numbers in front of the nodes indicate bootstrap support (1000 replicates, only values higher than 50% are presented). The vertical bars represent species delimitations taxonomies obtained from morphology and different species delimitation methods. The same colour indicates the same nominal species. Only the cases where incongruence between different delimitation methods were observed are shown. Note that this tree is not the reconstruction of evolutionary history of presented taxa.
The intraspecific variation within BINs obtained, calculated using uncorrected p-distance and Kimura 2-parameter (K2P). Taxa represented by a single sequence are not listed.
| Family | Taxon | No. of ind. | No. of haplotypes | p-distance |
|
|---|---|---|---|---|---|
|
|
| 5 | 2 | 0.001 | 0.001 |
|
|
| 6 | 5 | 0.005 | 0.005 |
|
|
| 6 | 4 | 0.006 | 0.006 |
|
|
| 2 | 2 | 0.002 | 0.002 |
|
|
| 4 | 1 | 0.000 | 0.000 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 2 | 2 | 0.002 | 0.002 |
|
|
| 4 | 2 | 0.010 | 0.010 |
|
|
| 3 | 2 | 0.001 | 0.001 |
|
|
| 12 | 1 | 0.000 | 0.000 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 4 | 1 | 0.000 | 0.000 |
|
|
| 4 | 2 | 0.001 | 0.001 |
|
|
| 3 | 2 | 0.003 | 0.003 |
|
|
| 2 | 2 | 0.003 | 0.003 |
|
|
| 3 | 2 | 0.001 | 0.001 |
|
|
| 4 | 4 | 0.008 | 0.008 |
|
|
| 2 | 2 | 0.003 | 0.003 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 6 | 2 | 0.001 | 0.001 |
|
|
| 3 | 3 | 0.002 | 0.002 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 3 | 1 | 0.000 | 0.000 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 2 | 2 | 0.002 | 0.002 |
|
|
| 7 | 1 | 0.000 | 0.000 |
|
|
| 4 | 2 | 0.001 | 0.001 |
|
|
| 2 | 2 | 0.002 | 0.002 |
|
|
| 3 | 3 | 0.006 | 0.006 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 2 | 2 | 0.019 | 0.019 |
|
|
| 2 | 1 | 0.000 | 0.000 |
|
|
| 2 | 2 | 0.002 | 0.002 |
|
|
| 4 | 2 | 0.002 | 0.002 |
The values of uncorrected p-distance, Kimura 2-parameter (K2P) and Barcode Identity Numbers (BINs) for nominal species presenting the highest intraspecific variation.
| Family | Species | No of ind. | No of haplotypes | p-distance |
|
|
|---|---|---|---|---|---|---|
|
|
| 4 | 3 | 0.076 | 0.085 | |
|
|
| 8 | 3 | 0.093 | 0.106 | |
|
|
| 7 | 6 | 0.118 | 0.139 | |
|
|
| 3 | 2 | 0.056 | 0.060 | |
|
|
| 3 | 3 | 0.198 | 0.245 | |
|
|
| 5 | 5 | 0.032 | 0.033 |