Literature DB >> 29472366

Competitive resource allocation to metabolic pathways contributes to overflow metabolisms and emergent properties in cross-feeding microbial consortia.

Ross P Carlson1, Ashley E Beck2, Poonam Phalak3, Matthew W Fields2, Tomas Gedeon2, Luke Hanley4, William R Harcombe5, Michael A Henson3, Jeffrey J Heys2.   

Abstract

Resource scarcity is a common stress in nature and has a major impact on microbial physiology. This review highlights microbial acclimations to resource scarcity, focusing on resource investment strategies for chemoheterotrophs from the molecular level to the pathway level. Competitive resource allocation strategies often lead to a phenotype known as overflow metabolism; the resulting overflow byproducts can stabilize cooperative interactions in microbial communities and can lead to cross-feeding consortia. These consortia can exhibit emergent properties such as enhanced resource usage and biomass productivity. The literature distilled here draws parallels between in silico and laboratory studies and ties them together with ecological theories to better understand microbial stress responses and mutualistic consortia functioning.
© 2018 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Keywords:  biofilm; chemostat; consortia; emergent property; overflow metabolism; resource allocation

Mesh:

Year:  2018        PMID: 29472366     DOI: 10.1042/BST20170242

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  10 in total

Review 1.  Pseudomonad reverse carbon catabolite repression, interspecies metabolite exchange, and consortial division of labor.

Authors:  Heejoon Park; S Lee McGill; Adrienne D Arnold; Ross P Carlson
Journal:  Cell Mol Life Sci       Date:  2019-11-25       Impact factor: 9.261

Review 2.  Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes.

Authors:  Victor Mataigne; Nathan Vannier; Philippe Vandenkoornhuyse; Stéphane Hacquard
Journal:  Front Microbiol       Date:  2021-12-20       Impact factor: 5.640

3.  Pseudomonas aeruginosa reverse diauxie is a multidimensional, optimized, resource utilization strategy.

Authors:  S Lee McGill; Yeni Yung; Kristopher A Hunt; Michael A Henson; Luke Hanley; Ross P Carlson
Journal:  Sci Rep       Date:  2021-01-14       Impact factor: 4.379

Review 4.  Enabling rational gut microbiome manipulations by understanding gut ecology through experimentally-evidenced in silico models.

Authors:  Juan P Molina Ortiz; Dale D McClure; Erin R Shanahan; Fariba Dehghani; Andrew J Holmes; Mark N Read
Journal:  Gut Microbes       Date:  2021 Jan-Dec

5.  Environment Constrains Fitness Advantages of Division of Labor in Microbial Consortia Engineered for Metabolite Push or Pull Interactions.

Authors:  Ashley E Beck; Kathryn Pintar; Diana Schepens; Ashley Schrammeck; Timothy Johnson; Alissa Bleem; Martina Du; William R Harcombe; Hans C Bernstein; Jeffrey J Heys; Tomas Gedeon; Ross P Carlson
Journal:  mSystems       Date:  2022-06-28       Impact factor: 7.324

6.  Intraspecies Signaling between Common Variants of Pseudomonas aeruginosa Increases Production of Quorum-Sensing-Controlled Virulence Factors.

Authors:  Dallas L Mould; Nico J Botelho; Deborah A Hogan
Journal:  mBio       Date:  2020-08-25       Impact factor: 7.867

7.  Evolution of bidirectional costly mutualism from byproduct consumption.

Authors:  William R Harcombe; Jeremy M Chacón; Elizabeth M Adamowicz; Lon M Chubiz; Christopher J Marx
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-22       Impact factor: 11.205

8.  Reverse diauxie phenotype in Pseudomonas aeruginosa biofilm revealed by exometabolomics and label-free proteomics.

Authors:  Yeni P Yung; S Lee McGill; Hui Chen; Heejoon Park; Ross P Carlson; Luke Hanley
Journal:  NPJ Biofilms Microbiomes       Date:  2019-10-25       Impact factor: 7.290

9.  Stoichiometric Modeling of Artificial String Chemistries Reveals Constraints on Metabolic Network Structure.

Authors:  Devlin Moyer; Alan R Pacheco; David B Bernstein; Daniel Segrè
Journal:  J Mol Evol       Date:  2021-07-06       Impact factor: 2.395

10.  Comparative Population Genetics in the Human Gut Microbiome.

Authors:  William R Shoemaker; Daisy Chen; Nandita R Garud
Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416

  10 in total

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