| Literature DB >> 29468017 |
Cassia F Read1, David H Duncan1,2, Chiu Yee Catherine Ho1,2, Matt White2, Peter A Vesk1.
Abstract
Plant ecologists require spatial information on functional soil properties but are often faced with soil classifications that are not directly interpretable or useful for statistical models. Sand and clay content are important soil properties because they indicate soil water-holding capacity and nutrient content, yet these data are not available for much of the landscape. Remotely sensed soil radiometric data offer promise for developing statistical models of functional soil properties applicable over large areas. Here, we build models linking radiometric data for an area of 40,000 km2 with soil physicochemical data collected over a period of 30 years and demonstrate a strong relationship between gamma radiometric potassium (40K), thorium (²³²Th), and soil sand and clay content. Our models showed predictive performance of 43% with internal cross-validation (to held-out data) and ~30% for external validation to an independent test dataset. This work contributes to broader availability and uptake of remote sensing products for explaining patterns in plant distribution and performance across landscapes.Entities:
Keywords: Gamma radiometric data; boosted regression tree models; clay; field estimation; particle size analysis; potassium; remote sensing; sand; soil texture; thorium
Year: 2018 PMID: 29468017 PMCID: PMC5817144 DOI: 10.1002/ece3.3417
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Map of the study area in Australia (inset), featuring a grayscale image of radiometric Th (darker shade = greater emission), with the locations of soil pits (training dataset, crosses), and the test dataset (circles) superimposed
Predictive boosted regression tree (BRT) models of field‐estimated sand (%) and clay (%) in the upper (A) and lower (B) soil profiles for the “VSIS training datasets,” showing relative influence (%) of model variables: gamma radiometric (ɣTh and ɣK count) data, topographic wetness index (TWI), and climate data
| Sand | Clay | |||
|---|---|---|---|---|
| A | B | A | B | |
| Relative influence | ||||
| γTh | 44.7 | 42.5 | 45.0 | 40.2 |
| γK | 26.0 | 8.2 | 25.5 | 8.2 |
| TWI | 16.1 | 10.8 | 16.8 | 12.0 |
| Annual precipitation | 9.1 | 26.6 | 8.6 | 27.4 |
| Annual temperature | 2.6 | 4.6 | 2.6 | 4.0 |
| Annual radiation | 1.4 | 7.3 | 1.3 | 8.1 |
| Predictive deviance | ||||
| Internal cv on held‐out data | 43.0 | 29.2 | 43.2 | 29.8 |
| External validation on “DELWP test dataset” | 30.0 | – | 30.25 | – |
Predictive deviance (%) of the BRT model was calculated by internal cross‐validation on held‐out VSIS training data and external validation on the independent “DELWP test dataset” (where the upper profile (A) is depth 5 cm and lower (B) is depth 30 cm). Sand and clay content were classified in the field, transformed to percent following Minasny et al. (2007), and logit‐transformed (logit ((y*0.998)+0.001)) prior to analyses.
Soil and environmental variables used in modeling for both the primary “VSIS training dataset” and the “DELWP test dataset.”
| Training | Test | |||
|---|---|---|---|---|
| Radiometric variables | ||||
| γK (%) | −0.32 to 4.13 | −0.28 to 2.83 | ||
| γTh (ppm) | −2.11 to 27.9 | −3.16 to 19.2 | ||
| Soil profile (horizon or depth (cm)) | A | B | 5 | 30 |
| Soil texture variables | ||||
| Sand (%) | 27–94 (66) | 27–94 (41) | 27–94 (69) | 27–94 (59) |
| Clay (%) | 4–57 (24) | 4–57 (44) | 4–57 (22) | 4–57 (30) |
| Soil chemical variables | ||||
| pH | 4.3–9.8 | 4.6–10.2 | 5–9.4 | 4.8–9.8 |
| EC (dS/m) | 0–86 | 0–44.7 | 0.05–8.2 | 0.05–11 |
| Exchangeable Ca (meq/100 g) | 0–36 (55%) | 0–32 (70%) | N/A | N/A |
| Exchangeable K (meq/100 g) | 0–4.2 (55%) | 0.1–5.1 (70%) | N/A | N/A |
| Exchangeable Mg (meq/100 g) | 0–21 (55%) | 0.8–30 (70%) | N/A | N/A |
| Exchangeable Na (meq/100 g) | 0–24 (55%) | 0–22 (70%) | N/A | N/A |
| Chloride (mg/kg) | 0–18 (32%) | 0–2.4 (53%) | N/A | N/A |
| Organic carbon (%) | 0–99 (48%) | 0.1–2.5 (18%) | N/A | N/A |
| Available water capacity (AWC %) | 0–54 (35%) | 2–31 (36%) | N/A | N/A |
| Climate and environmental variables | ||||
| Annual radiation (MJ/m²/day × 10) | 151–184 | 165–185 | ||
| Annual precipitation (mm) | 261–900 | 259–518 | ||
| Annual temperature (°C × 10) | 106–166 | 138–167 | ||
| Topographic wetness index (TWI) | 6341–10365 | 7202–10343 | ||
Derived from 50‐m gridded rasters, Department of Economic Development, Jobs, Transport and Resources, Victoria, for airborne gamma radiometric spectrometry surveys.
Estimate from field texture following Minasny et al. (2007).
Derived from maps computed from a 50‐m digital elevation model (DEM) using the software package ANUCLIM 5.1 (Houlder, Hutchinson, Nix, & McMahon, 2000). The variables annual radiation and annual temperature had been premultiplied by 10.
Topographic wetness index computed using the Shuttle Radar Topography Mission (SRTM) 100‐m digital elevation model and TOPOCROP version 1.2 (Schmidt, 2002) with an extension for ArcView 3.2 that implements various Terrain Indices.
Minimum and maximum values are shown, and mean values for sand and clay (%) are given in parentheses. Percent of data available for each variable is indicated in parentheses where dataset was incomplete; N/A indicates data not available. Soil sampling locations are indicated, where VSIS sampling was stratified by A and B horizons (n = 895 and 867 sites, respectively) and DELWP sampling was stratified by depth 5 or 30 cm (398 and 396 sites, respectively).
Figure 2Partial dependence plots of five most influential variables in explanatory boosted regression tree (BRT) models for potassium (ɣK %) and thorium (ɣTh ppm) radiometric data (from “VSIS training dataset”). A and B indicate upper and lower soil horizons, respectively. The model for ɣK had a predictive deviance of 36%, and variable contribution to the final model was as follows: sand % (A, 22.0%), clay % (A, 18.3%), soil pH (A and B, 8.7% and 6.2%, respectively), and soil chloride mg/kg (A, 5.5%). The model for ɣTh had predictive deviance of 53%, and variable contribution to final model was as follows: clay % (A, 20.8%), pH (A, 19.1%), sand % (A, 18.6%), pH (B, 7.8%), and chloride mg/kg (A, 4.6%). NB. Y‐axis is plotted in the original scale for γK and γTh, but models were run on square‐root‐transformed data for γK and log‐transformed data for γTh. Gray lines show 95% confidence intervals
Figure 3Partial dependence plots of percent sand and clay (A horizon) from predictive boosted regression tree (BRT) models of “VSIS training dataset.” Plots show the influence of radiometric variables potassium (ɣK %) and thorium (ɣTh ppm). Soil texture percentage was transformed from field‐estimated soil texture classes following Minasny et al. (2007). Gray lines show 95% confidence intervals. For details on variable relative influence, refer to Table 2. Note, plots show back‐transformed response variables; the original models were run on logit‐transformed data
Figure 4Plot of observed A‐horizon soil fractions in “DELWP test data” versus predicted soil fractions derived from boosted regression tree (BRT) model of “VSIS training data.” Observed soil fractions were from field‐estimated sand and clay content, transformed to % sand and clay, and predicted soil fractions were from the VSIS (training) model based on field estimate of soil sand and clay content, transformed to % sand and clay. Transformations followed Minasny et al. (2007)