| Literature DB >> 29462187 |
Henock Ambachew1,2,3, Meijuan Zheng1,2, Faustina Pappoe4,5, Jilong Shen2,4, Yuanhong Xu1,2,4.
Abstract
Hepatitis B virus (HBV) prevalence is highest in Sub-Saharan Africa including Ethiopia. HBV genotypes have distinct geographic distributions and play a role in course of infection and treatment management. However, in Ethiopia there is paucity of information about distribution of HBV genotypes. This study was done to determine genotype, mutation and sero-virological profiles of HBV isolates in Southern Ethiopia. Cross-sectional, laboratory based study was conducted on 103HBsAg sero-positive samples from a total of 2,237 screened blood donors. HBV serological markers and biochemical assays were done. Serum viral load was measured using quantitative real-time PCR. Partial HBV S-gene was amplified with nested PCR and sequenced. Bioinformatics tools were utilized to determine genotypes, serotypes and mutations. Of 103 HBsAg reactive serum samples, 14.6% and 70.9% were sero-positive for HBeAg and HBeAb, respectively. Ninety-eight samples gave detectable viral load with a median of 3.46(2.62-4.82) log IU/ml. HBeAg sero-positive donors carried elevated levels of viral load. Eighty five isolates were successfully amplified, sequenced and genotyped into 58 (68.2%) genotype A (HBV/A) and 27 (31.8%) genotype D (HBV/D). HBV serotypes found were adw2 (74.1%), ayw2 (24.7%), and ayw3 (1.2%). In twenty-four (28.2%) samples mutations in the major hydrophilic region (MHR) were observed. Donors infected with HBV/A had higher viral load and more frequent MHR mutation than HBV/D infected donors. This study illustrated distribution of HBV genotype A and D among blood donors in southern Ethiopia. It also demonstrated occurrence HBV variants that may influence clinical aspects of HBV infection. The study contributes in narrowing the existing gap of HBV molecular study in Ethiopia.Entities:
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Year: 2018 PMID: 29462187 PMCID: PMC5819820 DOI: 10.1371/journal.pone.0193177
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographic and laboratory profiles of HBsAg sero-positive blood donors.
| Characteristics | Values |
|---|---|
| 87:16 | |
| 25(21–30) | |
| 15(14.6) | |
| 73(70.9) | |
| 21(17–29) | |
| 30(25–40) | |
| 3.46(2.62–4.82) | |
| | 63(74.1) |
| | 21(24.7) |
| | 1(1.2) |
| | 58(68.2) |
| | 27(31.8) |
All continuous quantitative data are expressed as Median (Inter-quartile Range), M (IQR)
Fig 1Neighbor-Joining rooted phylogenetic tree of partial HBV S-gene (231–801 nt) sequences from 85 Ethiopian isolates start with ETHAW and marked by red-dot () and 71 reference sequences retrieved from GenBank with accession number followed by respective HBV genotype A to H.
The numbers at the nodes indicate percentage of bootstrapping values.
Comparison of HBV genotype A and genotype D infected donors with demographic and laboratory profiles.
| Characteristics | Genotype A (HBV/A)(n = 58) | Genotype D (HBV/D)(n = 27) | |
|---|---|---|---|
| 48:10 | 23:4 | 0.999 | |
| 26(20–30) | 23(21–30) | 0.667 | |
| 13(22.4) | 2(7.4) | 0.129 | |
| 36(62) | 22(81) | 0.073 | |
| 21.5(16.7–33.0) | 22(18–24) | 0.769 | |
| 34(26.7–46.5) | 30(26–35) | 0.093 | |
| 4.15(3.26–6.26) | 3.11(2.51–3.98) | 0.005 | |
| 58(100) | 5 (18.5) | <0.001 | |
| 0 | 21(77.8) | ||
| 0 | 1(3.7) | ||
| 21 (36.2) | 3(11.1) | 0.013 |
All continuous quantitative data are expressed as Median (Inter-quartile Range), M (IQR)
*denotes statistically significant p-value(< 0.05)
Distribution of mutation in partial HBV S-gene among isolates from blood donors.
| HBV S-gene Region | Mutation | Sample/Sequence Identification | |
|---|---|---|---|
| MHR (a.a 99–169) | ‘a’ determinant region(a.a. 124–147) | T126I/N | ETHAW58, ETHAW83, ETHAW93 |
| N131T | ETHAW4, ETHAW26 | ||
| M133V | ETHAW13 | ||
| F134Y | ETHAW4, ETHAW26 | ||
| T143L | ETHAW4, ETHAW26 | ||
| Outside ‘a’ determinant region(a.a. 99–123 & 148–169) | M103I | ETHAW26 | |
| I110L | ETHAW32, ETHAW58 | ||
| T115I | ETHAW25 | ||
| T118A /P | ETHAW-3, 21, 22, 43 | ||
| G119 E/R | ETHAW3,17, 19 | ||
| Y161F | ETHAW-3, 24, 68, 57, 61, 99, 101, 102 | ||
| E164D/G | ETHAW-83, 92, 100 | ||
| V168A | ETHAW-26, 34 | ||
| Downstream of the MHR (a.a.170-200) | V177A | ETHAW87 | |
| W182 | ETHAW22, ETHAW43 | ||
| V184A | ETHAW77, ETHAW95 | ||
| T189I | ETHAW-21, 25, 85, 92 | ||
*denotes stop codon
Fig 2Distribution of amino acid substitutions (mutations) detected within the major hydrophobic region (MHR) of HBV S-gene among 21 genotype A isolates aligned with nine reference sequences retrieved from GenBank.