Literature DB >> 29461980

Killer cell immunoglobulin-like receptor 3DL1 variation modifies HLA-B*57 protection against HIV-1.

Maureen P Martin1, Vivek Naranbhai2,3, Patrick R Shea4, Ying Qi1, Veron Ramsuran1,3,5, Nicolas Vince1,6,7, Xiaojiang Gao1, Rasmi Thomas8,9, Zabrina L Brumme10,11, Jonathan M Carlson12, Steven M Wolinsky13, James J Goedert14, Bruce D Walker2, Florencia P Segal15, Steven G Deeks16, David W Haas17, Stephen A Migueles18, Mark Connors18, Nelson Michael8,9, Jacques Fellay19, Emma Gostick20,21, Sian Llewellyn-Lacey20,21, David A Price20,22, Bernard A Lafont23, Phillip Pymm24, Philippa M Saunders25, Jacqueline Widjaja25, Shu Cheng Wong25, Julian P Vivian24, Jamie Rossjohn20,21,24, Andrew G Brooks25, Mary Carrington1,2.   

Abstract

HLA-B*57 control of HIV involves enhanced CD8+ T cell responses against infected cells, but extensive heterogeneity exists in the level of HIV control among B*57+ individuals. Using whole-genome sequencing of untreated B*57+ HIV-1-infected controllers and noncontrollers, we identified a single variant (rs643347A/G) encoding an isoleucine-to-valine substitution at position 47 (I47V) of the inhibitory killer cell immunoglobulin-like receptor KIR3DL1 as the only significant modifier of B*57 protection. The association was replicated in an independent cohort and across multiple outcomes. The modifying effect of I47V was confined to B*57:01 and was not observed for the closely related B*57:03. Positions 2, 47, and 54 tracked one another nearly perfectly, and 2 KIR3DL1 allotypes differing only at these 3 positions showed significant differences in binding B*57:01 tetramers, whereas the protective allotype showed lower binding. Thus, variation in an immune NK cell receptor that binds B*57:01 modifies its protection. These data highlight the exquisite specificity of KIR-HLA interactions in human health and disease.

Entities:  

Keywords:  AIDS/HIV; Innate immunity; MHC class 1; NK cells

Mesh:

Substances:

Year:  2018        PMID: 29461980      PMCID: PMC5919796          DOI: 10.1172/JCI98463

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  54 in total

1.  Binding of a soluble p70 killer cell inhibitory receptor to HLA-B*5101: requirement for all three p70 immunoglobulin domains.

Authors:  S Rojo; N Wagtmann; E O Long
Journal:  Eur J Immunol       Date:  1997-02       Impact factor: 5.532

2.  Novel KIR3DL1 alleles and their expression levels on NK cells: convergent evolution of KIR3DL1 phenotype variation?

Authors:  Rasmi Thomas; Eriko Yamada; Galit Alter; Maureen P Martin; Arman A Bashirova; Paul J Norman; Marcus Altfeld; Peter Parham; Stephen K Anderson; Daniel W McVicar; Mary Carrington
Journal:  J Immunol       Date:  2008-05-15       Impact factor: 5.422

3.  Different NK cell surface phenotypes defined by the DX9 antibody are due to KIR3DL1 gene polymorphism.

Authors:  C M Gardiner; L A Guethlein; H G Shilling; M Pando; W H Carr; R Rajalingam; C Vilches; P Parham
Journal:  J Immunol       Date:  2001-03-01       Impact factor: 5.422

4.  Cross-reactive cytotoxic T lymphocytes against a HIV-1 p24 epitope in slow progressors with B*57.

Authors:  Geraldine M A Gillespie; Rupert Kaul; Tao Dong; Hong-Bing Yang; Tim Rostron; Job J Bwayo; Peter Kiama; Tim Peto; Francis A Plummer; Andrew J McMichael; Sarah L Rowland-Jones
Journal:  AIDS       Date:  2002-05-03       Impact factor: 4.177

5.  Mutational and structural analysis of KIR3DL1 reveals a lineage-defining allotypic dimorphism that impacts both HLA and peptide sensitivity.

Authors:  Geraldine M O'Connor; Julian P Vivian; Jacqueline M Widjaja; John S Bridgeman; Emma Gostick; Bernard A P Lafont; Stephen K Anderson; David A Price; Andrew G Brooks; Jamie Rossjohn; Daniel W McVicar
Journal:  J Immunol       Date:  2014-02-21       Impact factor: 5.422

6.  Dimorphic motifs in D0 and D1+D2 domains of killer cell Ig-like receptor 3DL1 combine to form receptors with high, moderate, and no avidity for the complex of a peptide derived from HIV and HLA-A*2402.

Authors:  Deepti Sharma; Karine Bastard; Lisbeth A Guethlein; Paul J Norman; Nobuyo Yawata; Makoto Yawata; Marcelo Pando; Hathairat Thananchai; Tao Dong; Sarah Rowland-Jones; Frances M Brodsky; Peter Parham
Journal:  J Immunol       Date:  2009-09-14       Impact factor: 5.422

7.  Human leukocyte antigen class I-restricted activation of CD8+ T cells provides the immunogenetic basis of a systemic drug hypersensitivity.

Authors:  Diana Chessman; Lyudmila Kostenko; Tessa Lethborg; Anthony W Purcell; Nicholas A Williamson; Zhenjun Chen; Lars Kjer-Nielsen; Nicole A Mifsud; Brian D Tait; Rhonda Holdsworth; Coral Ann Almeida; David Nolan; Whitney A Macdonald; Julia K Archbold; Anthony D Kellerher; Debbie Marriott; Simon Mallal; Mandvi Bharadwaj; Jamie Rossjohn; James McCluskey
Journal:  Immunity       Date:  2008-06       Impact factor: 31.745

8.  KIR locus polymorphisms: genotyping and disease association analysis.

Authors:  Maureen P Martin; Mary Carrington
Journal:  Methods Mol Biol       Date:  2008

9.  HLA-B57/B*5801 human immunodeficiency virus type 1 elite controllers select for rare gag variants associated with reduced viral replication capacity and strong cytotoxic T-lymphocyte [corrected] recognition.

Authors:  Toshiyuki Miura; Mark A Brockman; Arne Schneidewind; Michael Lobritz; Florencia Pereyra; Almas Rathod; Brian L Block; Zabrina L Brumme; Chanson J Brumme; Brett Baker; Alissa C Rothchild; Bin Li; Alicja Trocha; Emily Cutrell; Nicole Frahm; Christian Brander; Ildiko Toth; Eric J Arts; Todd M Allen; Bruce D Walker
Journal:  J Virol       Date:  2008-12-30       Impact factor: 5.103

10.  Effects of thymic selection of the T-cell repertoire on HLA class I-associated control of HIV infection.

Authors:  Andrej Kosmrlj; Elizabeth L Read; Ying Qi; Todd M Allen; Marcus Altfeld; Steven G Deeks; Florencia Pereyra; Mary Carrington; Bruce D Walker; Arup K Chakraborty
Journal:  Nature       Date:  2010-05-05       Impact factor: 49.962

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  31 in total

1.  KIR3DL1/S1 Allotypes Contribute Differentially to the Development of Behçet Disease.

Authors:  Harry Petrushkin; Paul J Norman; Emma Lougee; Peter Parham; Graham R Wallace; Miles R Stanford; Farida Fortune
Journal:  J Immunol       Date:  2019-08-12       Impact factor: 5.422

Review 2.  Immunologic Control of HIV-1: What Have We Learned and Can We Induce It?

Authors:  Daniel C Rogan; Mark Connors
Journal:  Curr HIV/AIDS Rep       Date:  2021-03-11       Impact factor: 5.071

3.  The molecular basis of how buried human leukocyte antigen polymorphism modulates natural killer cell function.

Authors:  Philippa M Saunders; Bruce J MacLachlan; Phillip Pymm; Patricia T Illing; Yuanchen Deng; Shu Cheng Wong; Clare V L Oates; Anthony W Purcell; Jamie Rossjohn; Julian P Vivian; Andrew G Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-13       Impact factor: 11.205

4.  Association of KIR Genes and MHC Class I Ligands with Atopic Dermatitis.

Authors:  David J Margolis; Nandita Mitra; Ole J Hoffstad; Brian S Kim; Dimitri S Monos; Elizabeth J Phillips
Journal:  J Immunol       Date:  2021-08-18       Impact factor: 5.426

5.  Primary HIV-1 Strains Use Nef To Downmodulate HLA-E Surface Expression.

Authors:  Thomas van Stigt Thans; Janet I Akko; Annika Niehrs; Wilfredo F Garcia-Beltran; Laura Richert; Christina M Stürzel; Christopher T Ford; Hui Li; Christina Ochsenbauer; John C Kappes; Beatrice H Hahn; Frank Kirchhoff; Glòria Martrus; Daniel Sauter; Marcus Altfeld; Angelique Hölzemer
Journal:  J Virol       Date:  2019-09-30       Impact factor: 5.103

6.  Multi-Ancestry Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.

Authors:  Candelaria Vergara; Chloe L Thio; Eric Johnson; Alex H Kral; Thomas R O'Brien; James J Goedert; Alessandra Mangia; Valeria Piazzolla; Shruti H Mehta; Gregory D Kirk; Arthur Y Kim; Georg M Lauer; Raymond T Chung; Andrea L Cox; Marion G Peters; Salim I Khakoo; Laurent Alric; Matthew E Cramp; Sharyne M Donfield; Brian R Edlin; Michael P Busch; Graeme Alexander; Hugo R Rosen; Edward L Murphy; Rachel Latanich; Genevieve L Wojcik; Margaret A Taub; Ana Valencia; David L Thomas; Priya Duggal
Journal:  Gastroenterology       Date:  2018-12-26       Impact factor: 22.682

7.  QnAs with Joel N. Blankson.

Authors:  Matthew Hardcastle
Journal:  Proc Natl Acad Sci U S A       Date:  2021-08-03       Impact factor: 11.205

8.  HLA Class I Polymorphisms Influencing Both Peptide Binding and KIR Interactions Are Associated with Remission among Children with Atopic Dermatitis: A Longitudinal Study.

Authors:  David J Margolis; Nandita Mitra; Brian S Kim; Jamie L Duke; Ron A Berna; Ole J Hoffstad; Jenna R Wasserman; Deborah A Ferriola; Tim L Mosbruger; Bradley S Wubbenhorst; Kathrine L Nathanson; Dimitri S Monos
Journal:  J Immunol       Date:  2021-04-16       Impact factor: 5.422

9.  Notch as an Immunologic Basis of Cancer Disparities.

Authors:  Portia LaLiah Thomas; Anil Shanker
Journal:  Cancer Health Disparities       Date:  2019-08-19

Review 10.  How elite controllers and posttreatment controllers inform our search for an HIV-1 cure.

Authors:  Jonathan Z Li; Joel N Blankson
Journal:  J Clin Invest       Date:  2021-06-01       Impact factor: 19.456

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