| Literature DB >> 29458338 |
Wei Hu1, Yujia Ye1, Yirui Yin2, Peng Sang1, Linhua Li1, Jing Wang1, Wen Wan1, Rui Li1, Xiangfeng Bai3, Yuehui Xie4, Zhaohui Meng5.
Abstract
BACKGROUND: Rheumatic heart disease (RHD) is an autoimmune disease triggered by acute rheumatic fever (ARF). Matrix metalloproteinases (MMPs) play an important role in the modulation of immune responses. The purpose of this study was to evaluate the association of MMP1, 3, and 12 promoter polymorphisms with RHD in a Han population in Southern China since the 3 genes are localized on the same chromosome and have a combined effect.Entities:
Keywords: Allele frequency; Extracellular matrix; Susceptibility
Mesh:
Substances:
Year: 2018 PMID: 29458338 PMCID: PMC5819250 DOI: 10.1186/s12881-018-0538-4
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
PCR and sequencing primers for the polymorphisms
| Gene (polymorphism) | Forward primer | Reverse primer | PCR product size (bp) |
|---|---|---|---|
| 5’-AGTGGCAAGTGTTCTTTGGTCTC-3’ | 5’-GTTCCACATTAAATTGTCTTGGGT-3’ | 495 | |
| 5’-TTATCTATCAGGCTTTCCTCTAAAC-3’ | 5’-CTGTGGCAATAAGATCCCTATGA-3’ | 571 | |
| 5’-GGATAGGTGGACGTAGAGG-3’ | 5’-CTTGCCAATTTCATAACAG-3’ | 601 |
Demographic and clinical characteristics of patients with RHD and the controls
| RHD patients | Controls |
| |
|---|---|---|---|
| Age (years) | 51.0 ± 5.4 | 50.9 ± 4.9 | 0.921 |
| Sex | 0.55 | ||
| Male | 46 (51.1%) | 41 (45.6%) | |
| Female | 44 (48.9%) | 49 (54.4%) | |
| Clinical characteristics | |||
| Carditis | 90 (100%) | 0 | |
| Arthritis | 0 | 0 | |
| Subcutaneous nodules | 0 | 0 | |
| Chorea | 0 | 0 | |
| Erythema marginatum | 0 | 0 | |
Age is represented as mean ± SD
RHD rheumatic heart disease, SD standard deviation
Genotype and allele distributions of MMP1, 3, and 12 polymorphisms
| Gene (polymorphism) | RHD | Controls |
| OR (95% CI) |
|---|---|---|---|---|
| Genotype | 0.072* | |||
| 1G/1G | 6 (6.7) | 15 (16.7) | – | (Ref.) |
| 1G/2G | 43 (47.8) | 44 (48.9) | 0.09 | 2.455 (0.87–6.926) |
| |
|
|
|
|
| Allele | ||||
| 1G | 55 (30.6) | 74 (41.1) | – | (Ref.) |
| |
|
|
|
|
| Genotype | 0.509* | |||
| 6A/6A | 65 (72.2) | 67 (74.4) | – | (Ref.) |
| 5A/6A | 21 (23.3) | 22 (24.4) | 0.983 | 0.993 (0.498–1.981) |
| 5A/5A | 4 (4.4) | 1 (1.1) | 0.230 | 3.908 (0.421–36.242) |
| Allele | ||||
| 6A | 151 (83.9) | 156 (86.7) | – | (Ref.) |
| 5A | 29 (16.1) | 24 (13.3) | 0.473 | 1.24 (0.689–2.231) |
| Genotype | 0.767* | |||
| A/A | 85 (94.4) | 83 (92.2) | – | (Ref.) |
| A/G | 5 (5.6) | 7 (7.8) | 0.569 | 0.708 (0.215–2.324) |
| G/G | 0 (0.0) | 0 (0.0) | – | – |
| Allele | ||||
| A | 175 (97.2) | 173 (96.1) | – | (Ref.) |
| G | 5 (2.8) | 7 (3.9) | 0.576 | 0.717 (0.223–2.307) |
The genotype and allele with p < 0.05 are shown in bold fonts
OR odds ratio, CI confidence interval, and Ref. reference
*p value calculated from 2 × 3 contingency table