Literature DB >> 29457977

The Single-Molecule Centroid Localization Algorithm Improves the Accuracy of Fluorescence Binding Assays.

Boyang Hua1, Yanbo Wang1, Seongjin Park2, Kyu Young Han2, Digvijay Singh1, Jin H Kim3, Wei Cheng3, Taekjip Ha1,4,5.   

Abstract

Here, we demonstrate that the use of the single-molecule centroid localization algorithm can improve the accuracy of fluorescence binding assays. Two major artifacts in this type of assay, i.e., nonspecific binding events and optically overlapping receptors, can be detected and corrected during analysis. The effectiveness of our method was confirmed by measuring two weak biomolecular interactions, the interaction between the B1 domain of streptococcal protein G and immunoglobulin G and the interaction between double-stranded DNA and the Cas9-RNA complex with limited sequence matches. This analysis routine requires little modification to common experimental protocols, making it readily applicable to existing data and future experiments.

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Year:  2018        PMID: 29457977      PMCID: PMC6149537          DOI: 10.1021/acs.biochem.7b01293

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  22 in total

1.  Engineering streptococcal protein G for increased alkaline stability.

Authors:  Susanne Gülich; Martin Linhult; Stefan Ståhl; Sophia Hober
Journal:  Protein Eng       Date:  2002-10

2.  Zero-mode waveguides for single-molecule analysis at high concentrations.

Authors:  M J Levene; J Korlach; S W Turner; M Foquet; H G Craighead; W W Webb
Journal:  Science       Date:  2003-01-31       Impact factor: 47.728

Review 3.  Single-molecule approaches to characterizing kinetics of biomolecular interactions.

Authors:  Antoine M van Oijen
Journal:  Curr Opin Biotechnol       Date:  2010-10-29       Impact factor: 9.740

4.  A functional single-molecule binding assay via force spectroscopy.

Authors:  Yi Cao; M M Balamurali; Deepak Sharma; Hongbin Li
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

5.  Streptococcal protein G. Gene structure and protein binding properties.

Authors:  U Sjöbring; L Björck; W Kastern
Journal:  J Biol Chem       Date:  1991-01-05       Impact factor: 5.157

6.  Fluorescence enhancement at docking sites of DNA-directed self-assembled nanoantennas.

Authors:  G P Acuna; F M Möller; P Holzmeister; S Beater; B Lalkens; P Tinnefeld
Journal:  Science       Date:  2012-10-26       Impact factor: 47.728

7.  Definition of IgG- and albumin-binding regions of streptococcal protein G.

Authors:  B Akerström; E Nielsen; L Björck
Journal:  J Biol Chem       Date:  1987-10-05       Impact factor: 5.157

8.  Simultaneous multiple-emitter fitting for single molecule super-resolution imaging.

Authors:  Fang Huang; Samantha L Schwartz; Jason M Byars; Keith A Lidke
Journal:  Biomed Opt Express       Date:  2011-04-29       Impact factor: 3.732

9.  Single-molecule imaging of an in vitro-evolved RNA aptamer reveals homogeneous ligand binding kinetics.

Authors:  Mark P Elenko; Jack W Szostak; Antoine M van Oijen
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

10.  An improved surface passivation method for single-molecule studies.

Authors:  Boyang Hua; Kyu Young Han; Ruobo Zhou; Hajin Kim; Xinghua Shi; Sanjaya C Abeysirigunawardena; Ankur Jain; Digvijay Singh; Vasudha Aggarwal; Sarah A Woodson; Taekjip Ha
Journal:  Nat Methods       Date:  2014-10-12       Impact factor: 28.547

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  1 in total

1.  An automated Bayesian pipeline for rapid analysis of single-molecule binding data.

Authors:  Carlas S Smith; Karina Jouravleva; Maximiliaan Huisman; Samson M Jolly; Phillip D Zamore; David Grunwald
Journal:  Nat Commun       Date:  2019-01-17       Impact factor: 14.919

  1 in total

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