Literature DB >> 29447475

The Divergent Genomes of Teleosts.

Vydianathan Ravi1, Byrappa Venkatesh1.   

Abstract

Boasting nearly 30,000 species, teleosts account for half of all extant vertebrates and approximately 98% of all ray-finned fish species (Actinopterygii). Teleosts are also the largest and most diverse group of vertebrates, exhibiting an astonishing level of morphological, physiological, and behavioral diversity. Previous studies had indicated that the teleost lineage has experienced an additional whole-genome duplication event. Recent comparative genomic analyses of teleosts and other bony vertebrates using spotted gar (a nonteleost ray-finned fish) and elephant shark (a cartilaginous fish) as outgroups have revealed several divergent features of teleost genomes. These include an accelerated evolutionary rate of protein-coding and nucleotide sequences, a higher rate of intron turnover, loss of many potential cis-regulatory elements and shorter conserved syntenic blocks. A combination of these divergent genomic features might have contributed to the evolution of the amazing phenotypic diversity and morphological innovations of teleosts.

Entities:  

Keywords:  conserved noncoding elements; conserved syntenic blocks; evolutionary rate; intron turnover; phenotypic diversity; whole-genome duplication

Mesh:

Year:  2018        PMID: 29447475     DOI: 10.1146/annurev-animal-030117-014821

Source DB:  PubMed          Journal:  Annu Rev Anim Biosci        ISSN: 2165-8102            Impact factor:   8.923


  43 in total

1.  Liver transcriptome resources of four commercially exploited teleost species.

Authors:  André M Machado; Antonio Muñoz-Merida; Elza Fonseca; Ana Veríssimo; Rui Pinto; Mónica Felício; Rute R da Fonseca; Elsa Froufe; L Filipe C Castro
Journal:  Sci Data       Date:  2020-07-07       Impact factor: 6.444

2.  Molecular Evolution of clock Genes in Vertebrates.

Authors:  Yang Mao; Feng Shao; Qingyuan Zhao; Zuogang Peng
Journal:  J Mol Evol       Date:  2021-07-23       Impact factor: 2.395

3.  Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data.

Authors:  Lily C Hughes; Guillermo Ortí; Yu Huang; Ying Sun; Carole C Baldwin; Andrew W Thompson; Dahiana Arcila; Ricardo Betancur-R; Chenhong Li; Leandro Becker; Nicolás Bellora; Xiaomeng Zhao; Xiaofeng Li; Min Wang; Chao Fang; Bing Xie; Zhuocheng Zhou; Hai Huang; Songlin Chen; Byrappa Venkatesh; Qiong Shi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-14       Impact factor: 11.205

4.  CSA: A high-throughput chromosome-scale assembly pipeline for vertebrate genomes.

Authors:  Heiner Kuhl; Ling Li; Sven Wuertz; Matthias Stöck; Xu-Fang Liang; Christophe Klopp
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

5.  Gene family evolution underlies cell-type diversification in the hypothalamus of teleosts.

Authors:  Maxwell E R Shafer; Ahilya N Sawh; Alexander F Schier
Journal:  Nat Ecol Evol       Date:  2021-11-25       Impact factor: 15.460

6.  Evolution of inwardly rectifying potassium channels and their gene expression in zebrafish embryos.

Authors:  Martin R Silic; Sarah Haruka Murata; Sung Jun Park; GuangJun Zhang
Journal:  Dev Dyn       Date:  2021-10-06       Impact factor: 3.780

Review 7.  Diving into the Evolutionary History of HSC70-Linked Selective Autophagy Pathways: Endosomal Microautophagy and Chaperone-Mediated Autophagy.

Authors:  Simon Schnebert; Maxime Goguet; Emilio J Vélez; Alexandra Depincé; Florian Beaumatin; Amaury Herpin; Iban Seiliez
Journal:  Cells       Date:  2022-06-16       Impact factor: 7.666

Review 8.  Overview of the betta fish genome regarding species radiation, parental care, behavioral aggression, and pigmentation model relevant to humans.

Authors:  Kornsorn Srikulnath; Worapong Singchat; Nararat Laopichienpong; Syed Farhan Ahmad; Maryam Jehangir; Navapong Subpayakom; Aorarat Suntronpong; Kornsuang Jangtarwan; Tavun Pongsanarm; Thitipong Panthum; Nattakan Ariyaraphong; Jitlada Camcuan; Prateep Duengkae; Sahabhop Dokkaew; Narongrit Muangmai
Journal:  Genes Genomics       Date:  2021-01-29       Impact factor: 1.839

Review 9.  Advancing human disease research with fish evolutionary mutant models.

Authors:  Emily A Beck; Hope M Healey; Clayton M Small; Mark C Currey; Thomas Desvignes; William A Cresko; John H Postlethwait
Journal:  Trends Genet       Date:  2021-07-29       Impact factor: 11.639

10.  Fossilized cell structures identify an ancient origin for the teleost whole-genome duplication.

Authors:  Donald Davesne; Matt Friedman; Armin D Schmitt; Vincent Fernandez; Giorgio Carnevale; Per E Ahlberg; Sophie Sanchez; Roger B J Benson
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

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