| Literature DB >> 29444675 |
Els Ducheyne1, Nhu Nguyen Tran Minh2, Nabil Haddad3, Ward Bryssinckx4, Evans Buliva2, Frédéric Simard5, Mamunur Rahman Malik2, Johannes Charlier4, Valérie De Waele4, Osama Mahmoud6, Muhammad Mukhtar7, Ali Bouattour8, Abdulhafid Hussain9, Guy Hendrickx4, David Roiz2,5.
Abstract
BACKGROUND: Aedes-borne diseases as dengue, zika, chikungunya and yellow fever are an emerging problem worldwide, being transmitted by Aedes aegypti and Aedes albopictus. Lack of up to date information about the distribution of Aedes species hampers surveillance and control. Global databases have been compiled but these did not capture data in the WHO Eastern Mediterranean Region (EMR), and any models built using these datasets fail to identify highly suitable areas where one or both species may occur. The first objective of this study was therefore to update the existing Ae. aegypti (Linnaeus, 1762) and Ae. albopictus (Skuse, 1895) compendia and the second objective was to generate species distribution models targeted to the EMR. A final objective was to engage the WHO points of contacts within the region to provide feedback and hence validate all model outputs.Entities:
Keywords: Aedes; Aedes aegypti; Aedes albopictus; Chikungunya; Dengue; Distribution; Spatial model; Surveillance; Yellow fever; Zika
Mesh:
Year: 2018 PMID: 29444675 PMCID: PMC5813415 DOI: 10.1186/s12942-018-0125-0
Source DB: PubMed Journal: Int J Health Geogr ISSN: 1476-072X Impact factor: 3.918
Fig. 1Mahalanobis distance values showing the degree of similarity in environmental conditions between locations worldwide and the EMR
Overview of the environmental and eco-climatic predictor variables used in spatial distribution modelling of Ae. aegypti and Ae. albopictus in the EMR
| Data layer | Description | Resolution (km) | Units | Origin |
|---|---|---|---|---|
| Altitude | Elevation above sea level | 5 × 5 | m | WorldClima |
| BIO1 | Annual mean temperature | 5 × 5 | °C | WorldClim |
| BIO2 | Mean diurnal range (mean of monthly (max temp − min temp)) | 5 × 5 | °C | WorldClim |
| BIO3 | Isothermality (BIO2/BIO7) (× 100) | 5 × 5 | % | WorldClim |
| BIO4 | Temperature seasonality (standard deviation × 100) | 5 × 5 | % | WorldClim |
| BIO5 | Max temperature of warmest month | 5 × 5 | °C | WorldClim |
| BIO6 | Min temperature of coldest month | 5 × 5 | °C | WorldClim |
| BIO7 | Temperature annual range (BIO5–BIO6) | 5 × 5 km | °C | WorldClim |
| BIO8 | Mean temperature of wettest quarter | 5 × 5 | °C | WorldClim |
| BIO9 | Mean temperature of driest quarter | 5 × 5 | °C | WorldClim |
| BIO10 | Mean temperature of warmest quarter | 5 × 5 | °C | WorldClim |
| BIO11 | Mean temperature of coldest quarter | 5 × 5 | °C | WorldClim |
| BIO12 | Annual precipitation | 5 × 5 | mm | WorldClim |
| BIO13 | Precipitation of wettest month | 5 × 5 | mm | WorldClim |
| BIO14 | Precipitation of driest month | 5 × 5 | mm | WorldClim |
| BIO15 | Precipitation seasonality (coefficient of variation) | 5 × 5 | % | WorldClim |
| BIO16 | Precipitation of wettest quarter | 5 × 5 | mm | WorldClim |
| BIO17 | Precipitation of driest quarter | 5 × 5 | mm | WorldClim |
| BIO18 | Precipitation of warmest quarter | 5 × 5 | mm | WorldClim |
| BIO19 | Precipitation of coldest quarter | 5 × 5 | mm | WorldClim |
| Fourier transforms of Tmax, Tmean and Tmin | Amplitudes 1, 2, and 3 | 50 × 50 | °C | EDENextb |
| Phases 1, 2, and 3 | 50 × 50 | Day of year | EDENext | |
| Fourier transforms of precipitation | Amplitudes 1, 2 and 3 | 50 × 50 | mm | EDENext |
| Phases 1, 2, and 3 | 50 × 50 | Day of year | EDENext | |
| Night-time light | Night-time light | 5 × 5 | Unit-less | DMSP—NASAc |
| Average NDVI | Global annual sum NDVI | 5 × 5 | Unit-less | LADAd |
| Human population | Population density grid | 5 × 5 | Persons/pixel | SEDACe |
a http://www.worldclim.org/bioclim
b http://www.edenextdata.com
c http://ngdc.noaa.gov/eog/dmsp/downloadV4composites.html
d http://www.fao.org/geonetwork
e http://sedac.ciesin.columbia.edu/data/set/grump-v1-population-density/data-download
Fig. 2Locations where Ae. aegypti was found within the EMR Mahalanobis distance
Fig. 3Locations where Ae. albopictus was found within the EMR Mahalanobis distance
Fig. 4Predicted probability of Ae. aegypti occurrence obtained from a random forest model
Fig. 5Predicted probability of Ae. aegypti occurrence using maximum values at the pixel level from a series of 100 random forest models
Fig. 6a Uncertainty of the Ae. aegypti predicted probability of occurrence using standard deviations at the pixel level from a series of 100 random forest models and b signal to noise ratio
Fig. 7Predicted probability of Ae. albopictus occurrence obtained from a random forest model
Fig. 8Predicted probability of Ae. albopictus occurrence using maximum values at the pixel level from a series of 100 random forest models
Fig. 9a Uncertainty of the Ae. albopictus predicted probability of occurrence using standard deviations at the pixel level from a series of 100 random forest models and b signal to noise ratio
Fig. 10Dot chart of variable importance for predicting the occurrence of Ae. aegypti. Only the 15 most important variables are given
Fig. 11Dot chart of variable importance for predicting the occurrence of Ae. albopictus. Only the 15 most important variables are given
Results of the country-based expert validation
| Country | Accuracy (CI) | Kappa | Sensitivity | Specificity | ||||
|---|---|---|---|---|---|---|---|---|
| 0 | 1 | 2 | 0 | 1 | 2 | |||
| Tunisia | 0.989 (0.985, 0.994) | 0.976 | 0.98 | 1 | 0.99 | 0.992 | 0.998 | 0.991 |
| Oman | 0.987 (0.982, 0.992) | 0.968 | 1 | 0.561 | 1 | 1 | 1 | 0.936 |
| Pakistan | 0.928 (0.916, 0.939) | 0.879 | 1 | 0.75 | 0.93 | 0.85 | 1 | 0.994 |
Fig. 12Map difference between Kraemer et al. [1, 2] and EMR specific Ae. aegypti probability
Fig. 13Map difference between Kraemer et al. [1, 2] and EMR specific Ae. albopictus probability