Literature DB >> 29439562

Ion Channel Sensing: Are Fluctuations the Crux of the Matter?

Marina A Kasimova1, Aysenur Yazici2, Yevgen Yudin2, Daniele Granata1, Michael L Klein1, Tibor Rohacs2, Vincenzo Carnevale1.   

Abstract

The nonselective cation channel TRPV1 is responsible for transducing noxious stimuli into action potentials propagating through peripheral nerves. It is activated by temperatures greater than 43 °C, while remaining completely nonconductive at temperatures lower than this threshold. The origin of this sharp response, which makes TRPV1 a biological temperature sensor, is not understood. Here we used molecular dynamics simulations and free energy calculations to characterize the molecular determinants of the transition between nonconductive and conductive states. We found that hydration of the pore and thus ion permeation depends critically on the polar character of its molecular surface: in this narrow hydrophobic enclosure, the motion of a polar side-chain is sufficient to stabilize either the dry or wet state. The conformation of this side-chain is in turn coupled to the hydration state of four peripheral cavities, which undergo a dewetting transition at the activation temperature.

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Year:  2018        PMID: 29439562      PMCID: PMC6310152          DOI: 10.1021/acs.jpclett.7b03396

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.888


  43 in total

Review 1.  Molecular mechanisms of nociception.

Authors:  D Julius; A I Basbaum
Journal:  Nature       Date:  2001-09-13       Impact factor: 49.962

2.  Escaping free-energy minima.

Authors:  Alessandro Laio; Michele Parrinello
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

3.  Recognition of transmembrane helices by the endoplasmic reticulum translocon.

Authors:  Tara Hessa; Hyun Kim; Karl Bihlmaier; Carolina Lundin; Jorrit Boekel; Helena Andersson; Ingmarie Nilsson; Stephen H White; Gunnar von Heijne
Journal:  Nature       Date:  2005-01-27       Impact factor: 49.962

4.  A hot-sensing cold receptor: C-terminal domain determines thermosensation in transient receptor potential channels.

Authors:  Sebastian Brauchi; Gerardo Orta; Marcelo Salazar; Eduardo Rosenmann; Ramon Latorre
Journal:  J Neurosci       Date:  2006-05-03       Impact factor: 6.167

5.  Cloning and functional expression of a human orthologue of rat vanilloid receptor-1.

Authors:  Philip Hayes; Helen J Meadows; Martin J Gunthorpe; Mark H Harries; Malcolm D Duckworth; William Cairns; David C Harrison; Catherine E Clarke; Kathryn Ellington; Rab K Prinjha; Amanda J L Barton; Andrew D Medhurst; Graham D Smith; Simon Topp; Paul Murdock; Gareth J Sanger; John Terrett; Owen Jenkins; Christopher D Benham; Andrew D Randall; Isro S Gloger; John B Davis
Journal:  Pain       Date:  2000-11       Impact factor: 6.961

6.  Functional role of C-terminal cytoplasmic tail of rat vanilloid receptor 1.

Authors:  Viktorie Vlachová; Jan Teisinger; Klára Susánková; Alla Lyfenko; Rüdiger Ettrich; Ladislav Vyklický
Journal:  J Neurosci       Date:  2003-02-15       Impact factor: 6.167

7.  Water clusters in nonpolar cavities.

Authors:  Subramanian Vaitheeswaran; Hao Yin; Jayendran C Rasaiah; Gerhard Hummer
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-30       Impact factor: 11.205

8.  Molecular dynamics study of gating in the mechanosensitive channel of small conductance MscS.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-31       Impact factor: 4.033

9.  Water dynamics and dewetting transitions in the small mechanosensitive channel MscS.

Authors:  Andriy Anishkin; Sergei Sukharev
Journal:  Biophys J       Date:  2004-05       Impact factor: 4.033

10.  Liquid-vapor oscillations of water in hydrophobic nanopores.

Authors:  Oliver Beckstein; Mark S P Sansom
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-09       Impact factor: 11.205

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  17 in total

Review 1.  Structural insights into the gating mechanisms of TRPV channels.

Authors:  Ruth A Pumroy; Edwin C Fluck; Tofayel Ahmed; Vera Y Moiseenkova-Bell
Journal:  Cell Calcium       Date:  2020-01-24       Impact factor: 6.817

2.  The Contribution of the Ankyrin Repeat Domain of TRPV1 as a Thermal Module.

Authors:  Ernesto Ladrón-de-Guevara; Laura Dominguez; Gisela E Rangel-Yescas; Daniel A Fernández-Velasco; Alfredo Torres-Larios; Tamara Rosenbaum; Leon D Islas
Journal:  Biophys J       Date:  2019-11-11       Impact factor: 4.033

3.  Evolutionarily Conserved Interactions within the Pore Domain of Acid-Sensing Ion Channels.

Authors:  Marina A Kasimova; Timothy Lynagh; Zeshan Pervez Sheikh; Daniele Granata; Christian Bernsen Borg; Vincenzo Carnevale; Stephan Alexander Pless
Journal:  Biophys J       Date:  2019-09-06       Impact factor: 4.033

4.  Playing the long game wins the cohesion-adhesion rivalry.

Authors:  Richard C Remsing
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-28       Impact factor: 11.205

Review 5.  Structure and function of the calcium-selective TRP channel TRPV6.

Authors:  Maria V Yelshanskaya; Kirill D Nadezhdin; Maria G Kurnikova; Alexander I Sobolevsky
Journal:  J Physiol       Date:  2020-03-13       Impact factor: 5.182

6.  An open state of a voltage-gated sodium channel involving a π-helix and conserved pore-facing asparagine.

Authors:  Koushik Choudhury; Marina A Kasimova; Sarah McComas; Rebecca J Howard; Lucie Delemotte
Journal:  Biophys J       Date:  2021-12-08       Impact factor: 4.033

Review 7.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

8.  Determining the molecular basis of voltage sensitivity in membrane proteins.

Authors:  Marina A Kasimova; Erik Lindahl; Lucie Delemotte
Journal:  J Gen Physiol       Date:  2018-08-27       Impact factor: 4.086

9.  Conformational ensemble of the human TRPV3 ion channel.

Authors:  Lejla Zubcevic; Mark A Herzik; Mengyu Wu; William F Borschel; Marscha Hirschi; Albert S Song; Gabriel C Lander; Seok-Yong Lee
Journal:  Nat Commun       Date:  2018-11-14       Impact factor: 14.919

10.  A hypothetical molecular mechanism for TRPV1 activation that invokes rotation of an S6 asparagine.

Authors:  Marina A Kasimova; Aysenur Torun Yazici; Yevgen Yudin; Daniele Granata; Michael L Klein; Tibor Rohacs; Vincenzo Carnevale
Journal:  J Gen Physiol       Date:  2018-10-17       Impact factor: 4.000

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