Literature DB >> 29437999

Microfluidic Encapsulation of Demembranated Sperm Nuclei in Xenopus Egg Extracts.

John Oakey1, Jesse C Gatlin2.   

Abstract

The cell-free nature of Xenopus egg extract makes it a uniquely tractable experimental model system. The extract, effectively unconfined cytoplasm, allows the direct and relatively straight-forward addition of purified proteins and other reagents, a characteristic that renders the system amenable to many biochemical and cell biological manipulations. Accessibility to the system also facilitates the direct physical manipulation and probing of biological structures, in turn enabling mechanical properties of intracellular assemblies and organelles, such as the mitotic spindle and nucleus, to be measured. Recently, multiphase microfluidics have been combined with Xenopus egg extracts to encapsulate discrete cytoplasmic volumes. Described here is a protocol detailing the use of multiphase microfluidic devices to encapsulate sperm nuclei within extract droplets of defined size and shape. This protocol can also be applied more generally to encapsulation of microbeads and other particles.
© 2018 Cold Spring Harbor Laboratory Press.

Entities:  

Year:  2018        PMID: 29437999     DOI: 10.1101/pdb.prot102913

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  8 in total

Review 1.  Organelle size scaling over embryonic development.

Authors:  Chase C Wesley; Sampada Mishra; Daniel L Levy
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2020-01-31       Impact factor: 5.814

Review 2.  Regulation of organelle size and organization during development.

Authors:  Pan Chen; Daniel L Levy
Journal:  Semin Cell Dev Biol       Date:  2022-02-08       Impact factor: 7.499

3.  Microtubule Growth Rates Are Sensitive to Global and Local Changes in Microtubule Plus-End Density.

Authors:  Zachary M Geisterfer; Daniel Y Zhu; Timothy J Mitchison; John Oakey; Jesse C Gatlin
Journal:  Curr Biol       Date:  2020-06-11       Impact factor: 10.834

4.  Xenopus laevis Egg Extract Preparation and Live Imaging Methods for Visualizing Dynamic Cytoplasmic Organization.

Authors:  Xianrui Cheng; James E Ferrell
Journal:  J Vis Exp       Date:  2021-06-06       Impact factor: 1.355

5.  Nucleoplasmin is a limiting component in the scaling of nuclear size with cytoplasmic volume.

Authors:  Pan Chen; Miroslav Tomschik; Katherine M Nelson; John Oakey; Jesse C Gatlin; Daniel L Levy
Journal:  J Cell Biol       Date:  2019-10-21       Impact factor: 10.539

6.  Microfluidic encapsulation of Xenopus laevis cell-free extracts using hydrogel photolithography.

Authors:  Zachary M Geisterfer; John Oakey; Jesse C Gatlin
Journal:  STAR Protoc       Date:  2020-12-11

7.  Differential nuclear import sets the timing of protein access to the embryonic genome.

Authors:  Thao Nguyen; Eli J Costa; Tim Deibert; Jose Reyes; Felix C Keber; Miroslav Tomschik; Michael Stadlmeier; Meera Gupta; Chirag K Kumar; Edward R Cruz; Amanda Amodeo; Jesse C Gatlin; Martin Wühr
Journal:  Nat Commun       Date:  2022-10-06       Impact factor: 17.694

8.  Confinement size determines the architecture of Ran-induced microtubule networks.

Authors:  Ya Gai; Brian Cook; Sagar Setru; Howard A Stone; Sabine Petry
Journal:  Soft Matter       Date:  2021-05-27       Impact factor: 3.679

  8 in total

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