Literature DB >> 29436420

CHTyper, a Web Tool for Subtyping of Extraintestinal Pathogenic Escherichia coli Based on the fumC and fimH Alleles.

Louise Roer1, Thor Bech Johannesen1, Frank Hansen1, Marc Stegger1, Veronika Tchesnokova2, Evgeni Sokurenko2, Natasha Garibay1, Rosa Allesøe3, Martin C F Thomsen3, Ole Lund3, Henrik Hasman1, Anette M Hammerum4.   

Abstract

Entities:  

Keywords:  Escherichia coli; WGS

Mesh：

Substances：

Year:  2018        PMID： 29436420      PMCID： PMC5869820          DOI： 10.1128/JCM.00063-18

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  5 in total

1.  Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity.

Authors:  P R Hunter; M A Gaston
Journal:  J Clin Microbiol       Date:  1988-11       Impact factor: 5.948

2.  Development of a Web Tool for Escherichia coli Subtyping Based on fimH Alleles.

Authors:  Louise Roer; Veronika Tchesnokova; Rosa Allesøe; Mariya Muradova; Sujay Chattopadhyay; Johanne Ahrenfeldt; Martin C F Thomsen; Ole Lund; Frank Hansen; Anette M Hammerum; Evgeni Sokurenko; Henrik Hasman
Journal:  J Clin Microbiol       Date:  2017-06-07       Impact factor: 5.948

3.  High-resolution two-locus clonal typing of extraintestinal pathogenic Escherichia coli.

Authors:  Scott J Weissman; James R Johnson; Veronika Tchesnokova; Mariya Billig; Daniel Dykhuizen; Kim Riddell; Peggy Rogers; Xuan Qin; Susan Butler-Wu; Brad T Cookson; Ferric C Fang; Delia Scholes; Sujay Chattopadhyay; Evgeni Sokurenko
Journal:  Appl Environ Microbiol       Date:  2012-01-06       Impact factor: 4.792

4.  Abrupt emergence of a single dominant multidrug-resistant strain of Escherichia coli.

Authors:  James R Johnson; Veronika Tchesnokova; Brian Johnston; Connie Clabots; Pacita L Roberts; Mariya Billig; Kim Riddell; Peggy Rogers; Xuan Qin; Susan Butler-Wu; Lance B Price; Maliha Aziz; Marie-Hélène Nicolas-Chanoine; Chitrita Debroy; Ari Robicsek; Glen Hansen; Carl Urban; Joanne Platell; Darren J Trott; George Zhanel; Scott J Weissman; Brad T Cookson; Ferric C Fang; Ajit P Limaye; Delia Scholes; Sujay Chattopadhyay; David C Hooper; Evgeni V Sokurenko
Journal:  J Infect Dis       Date:  2013-01-03       Impact factor: 5.226

5.  Sex and virulence in Escherichia coli: an evolutionary perspective.

Authors:  Thierry Wirth; Daniel Falush; Ruiting Lan; Frances Colles; Patience Mensa; Lothar H Wieler; Helge Karch; Peter R Reeves; Martin C J Maiden; Howard Ochman; Mark Achtman
Journal:  Mol Microbiol       Date:  2006-06       Impact factor: 3.501
  5 in total
  8 in total

1.  Pandemic fluoroquinolone resistant Escherichia coli clone ST1193 emerged via simultaneous homologous recombinations in 11 gene loci.

Authors:  Veronika Tchesnokova; Matthew Radey; Sujay Chattopadhyay; Lydia Larson; Jamie Lee Weaver; Dagmara Kisiela; Evgeni V Sokurenko
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

2.  Occurrence and Genomic Characterization of Clone ST1193 Clonotype 14-64 in Uncomplicated Urinary Tract Infections Caused by Escherichia coli in Spain.

Authors:  Javier Fernández; Azucena Mora; Isidro García-Meniño; Pilar Lumbreras; Luz Lestón; Mónica Álvarez-Álvarez; Vanesa García; Jens Andre Hammerl
Journal:  Microbiol Spectr       Date:  2022-05-23

3.  Antibiotic Resistance and Virulence of Extraintestinal Pathogenic Escherichia coli (ExPEC) Vary According to Molecular Types.

Authors:  Yitao Duan; Huihui Gao; Liyang Zheng; Shuangqing Liu; Yang Cao; Siyuan Zhu; Zhenzhe Wu; Hongqiang Ren; Daqing Mao; Yi Luo
Journal:  Front Microbiol       Date:  2020-11-25       Impact factor: 5.640

4.  Presence of Broad-Spectrum Beta-Lactamase-Producing Enterobacteriaceae in Zoo Mammals.

Authors:  Chloë De Witte; Nick Vereecke; Sebastiaan Theuns; Claudia De Ruyck; Francis Vercammen; Tim Bouts; Filip Boyen; Hans Nauwynck; Freddy Haesebrouck
Journal:  Microorganisms       Date:  2021-04-14

5.  Genetic evaluation of ESBL-producing Escherichia coli urinary isolates in Otago, New Zealand.

Authors:  Isuri U Hapuarachchi; Rachel F Hannaway; Tabatha Roman; Ambarish Biswas; Kristin Dyet; Xochitl Morgan; James E Ussher
Journal:  JAC Antimicrob Resist       Date:  2021-11-10

6.  Presence of β-Lactamase-producing Enterobacterales and Salmonella Isolates in Marine Mammals.

Authors:  Olivia M Grünzweil; Lauren Palmer; Adriana Cabal; Michael P Szostak; Werner Ruppitsch; Christian Kornschober; Maciej Korus; Dusan Misic; Tanja Bernreiter-Hofer; Anna D J Korath; Andrea T Feßler; Franz Allerberger; Stefan Schwarz; Joachim Spergser; Elke Müller; Sascha D Braun; Stefan Monecke; Ralf Ehricht; Chris Walzer; Hrvoje Smodlaka; Igor Loncaric
Journal:  Int J Mol Sci       Date:  2021-05-31       Impact factor: 5.923

7.  Clonal Structure, Virulence Factor-encoding Genes and Antibiotic Resistance of Escherichia coli, Causing Urinary Tract Infections and Other Extraintestinal Infections in Humans in Spain and France during 2016.

Authors:  Saskia-Camille Flament-Simon; Marie-Hélène Nicolas-Chanoine; Vanesa García; Marion Duprilot; Noémie Mayer; María Pilar Alonso; Isidro García-Meniño; Jesús E Blanco; Miguel Blanco; Jorge Blanco
Journal:  Antibiotics (Basel)       Date:  2020-04-04

8.  High Prevalence of ST131 Subclades C2-H30Rx and C1-M27 Among Extended-Spectrum β-Lactamase-Producing Escherichia coli Causing Human Extraintestinal Infections in Patients From Two Hospitals of Spain and France During 2015.

Authors:  Saskia-Camille Flament-Simon; Vanesa García; Marion Duprilot; Noémie Mayer; María Pilar Alonso; Isidro García-Meniño; Jesús E Blanco; Miguel Blanco; Marie-Hélène Nicolas-Chanoine; Jorge Blanco
Journal:  Front Cell Infect Microbiol       Date:  2020-03-24       Impact factor: 5.293
  8 in total

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