Literature DB >> 29435937

Laser Capture Microdissection of Epithelium from a Wound Healing Model for MicroRNA Analysis.

Alyne Simões1,2, Zujian Chen3, Yan Zhao1, Lin Chen1, Virgilia Macias4, Luisa A DiPietro1,5, Xiaofeng Zhou6,7,8,9.   

Abstract

MicroRNAs are ~22 nucleotide-long noncoding RNAs influencing many cellular processes (including wound healing) by their regulatory functions on gene expression. The ability to analyze microRNA in different cells at the wound site is essential for understanding the critical role(s) of microRNA during various phases of wound healing. Laser capture micro-dissection (LCM) is an effective method to distinguish between relevant and non-relevant cells or tissues and enables the researcher to obtain homogeneous, ultra-pure samples from heterogeneous starting material. We present here our protocol for procuring epithelial cells from a mouse wound healing model using a Leica LMD7000 Laser Microdissection system, as well as the RNA isolation and downstream microRNA analysis. Using this method, researchers can selectively and routinely analyze regions of interest down to single cells to obtain results that are relevant, reproducible, and specific.

Entities:  

Keywords:  Epithelial cells; Frozen sample; LCM; MicroRNA; Mouse; RNA isolation; Wound healing

Mesh:

Substances:

Year:  2018        PMID: 29435937      PMCID: PMC5997841          DOI: 10.1007/978-1-4939-7601-0_19

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

1.  Laser-capture microdissection.

Authors:  Virginia Espina; Julia D Wulfkuhle; Valerie S Calvert; Amy VanMeter; Weidong Zhou; George Coukos; David H Geho; Emanuel F Petricoin; Lance A Liotta
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

2.  Laser capture microdissection.

Authors:  M R Emmert-Buck; R F Bonner; P D Smith; R F Chuaqui; Z Zhuang; S R Goldstein; R A Weiss; L A Liotta
Journal:  Science       Date:  1996-11-08       Impact factor: 47.728

3.  Updates in wound healing: Mechanisms and translation.

Authors:  Sabine A Eming; Marjana Tomic-Canic
Journal:  Exp Dermatol       Date:  2017-02       Impact factor: 3.960

Review 4.  Laser capture microdissection in the tissue biorepository.

Authors:  Angen Liu
Journal:  J Biomol Tech       Date:  2010-09

5.  Induction of specific microRNAs inhibits cutaneous wound healing.

Authors:  Irena Pastar; Aly Azeem Khan; Olivera Stojadinovic; Elizabeth A Lebrun; Mayrin Correa Medina; Harold Brem; Robert S Kirsner; Joaquin J Jimenez; Christina Leslie; Marjana Tomic-Canic
Journal:  J Biol Chem       Date:  2012-07-06       Impact factor: 5.157

6.  Positional differences in the wound transcriptome of skin and oral mucosa.

Authors:  Lin Chen; Zarema H Arbieva; Shujuan Guo; Phillip T Marucha; Thomas A Mustoe; Luisa A DiPietro
Journal:  BMC Genomics       Date:  2010-08-12       Impact factor: 3.969

7.  MicroRNA-99 family members suppress Homeobox A1 expression in epithelial cells.

Authors:  Dan Chen; Zujian Chen; Yi Jin; Dragan Dragas; Leitao Zhang; Barima S Adjei; Anxun Wang; Yang Dai; Xiaofeng Zhou
Journal:  PLoS One       Date:  2013-12-03       Impact factor: 3.240

8.  An Efficient LCM-Based Method for Tissue Specific Expression Analysis of Genes and miRNAs.

Authors:  Vibhav Gautam; Archita Singh; Sharmila Singh; Ananda K Sarkar
Journal:  Sci Rep       Date:  2016-02-10       Impact factor: 4.379

9.  MicroRNA-99 family targets AKT/mTOR signaling pathway in dermal wound healing.

Authors:  Yi Jin; Stéphanie D Tymen; Dan Chen; Zong Juan Fang; Yan Zhao; Dragan Dragas; Yang Dai; Phillip T Marucha; Xiaofeng Zhou
Journal:  PLoS One       Date:  2013-05-28       Impact factor: 3.240

10.  Intrinsic differences between oral and skin keratinocytes.

Authors:  Anna Turabelidze; Shujuan Guo; Allison Yen Chung; Lin Chen; Yang Dai; Phillip T Marucha; Luisa A DiPietro
Journal:  PLoS One       Date:  2014-09-08       Impact factor: 3.240

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  3 in total

1.  Overexpression of the Oral Mucosa-Specific microRNA-31 Promotes Skin Wound Closure.

Authors:  Lin Chen; Alyne Simões; Zujian Chen; Yan Zhao; Xinming Wu; Yang Dai; Luisa A DiPietro; Xiaofeng Zhou
Journal:  Int J Mol Sci       Date:  2019-07-27       Impact factor: 5.923

Review 2.  Laser Capture Microdissection in the Spatial Analysis of Epigenetic Modifications in Skin: A Comprehensive Review.

Authors:  Theja Bhamidipati; Mithun Sinha; Chandan K Sen; Kanhaiya Singh
Journal:  Oxid Med Cell Longev       Date:  2022-02-09       Impact factor: 6.543

3.  Canonical WNT pathway is activated in the airway epithelium in chronic obstructive pulmonary disease.

Authors:  François M Carlier; Sébastien Dupasquier; Jérôme Ambroise; Bruno Detry; Marylène Lecocq; Charline Biétry-Claudet; Yassine Boukala; Jean-Luc Gala; Caroline Bouzin; Stijn E Verleden; Delphine Hoton; Sophie Gohy; Bertrand Bearzatto; Charles Pilette
Journal:  EBioMedicine       Date:  2020-10-10       Impact factor: 8.143

  3 in total

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