Literature DB >> 29432886

On Information Metrics for Spatial Coding.

Bryan C Souza1, Rodrigo Pavão2, Hindiael Belchior3, Adriano B L Tort2.   

Abstract

The hippocampal formation is involved in navigation, and its neuronal activity exhibits a variety of spatial correlates (e.g., place cells, grid cells). The quantification of the information encoded by spikes has been standard procedure to identify which cells have spatial correlates. For place cells, most of the established metrics derive from Shannon's mutual information (Shannon, 1948), and convey information rate in bits/s or bits/spike (Skaggs et al., 1993, 1996). Despite their widespread use, the performance of these metrics in relation to the original mutual information metric has never been investigated. In this work, using simulated and real data, we find that the current information metrics correlate less with the accuracy of spatial decoding than the original mutual information metric. We also find that the top informative cells may differ among metrics, and show a surrogate-based normalization that yields comparable spatial information estimates. Since different information metrics may identify different neuronal populations, we discuss current and alternative definitions of spatially informative cells, which affect the metric choice.
Copyright © 2018 IBRO. Published by Elsevier Ltd. All rights reserved.

Keywords:  hippocampus; information; place cell; place field; spatial coding; spike train analysis

Mesh:

Year:  2018        PMID: 29432886     DOI: 10.1016/j.neuroscience.2018.01.066

Source DB:  PubMed          Journal:  Neuroscience        ISSN: 0306-4522            Impact factor:   3.590


  8 in total

1.  Dynamic control of hippocampal spatial coding resolution by local visual cues.

Authors:  Romain Bourboulou; Geoffrey Marti; Julie Koenig; Jerome Epsztein; François-Xavier Michon; Elissa El Feghaly; Morgane Nouguier; David Robbe
Journal:  Elife       Date:  2019-03-01       Impact factor: 8.140

2.  In Vivo Multi-Day Calcium Imaging of CA1 Hippocampus in Freely Moving Rats Reveals a High Preponderance of Place Cells with Consistent Place Fields.

Authors:  Hannah S Wirtshafter; John F Disterhoft
Journal:  J Neurosci       Date:  2022-04-29       Impact factor: 6.709

3.  GABAergic CA1 neurons are more stable following context changes than glutamatergic cells.

Authors:  Peter J Schuette; Juliane M Ikebara; Fernando M C V Reis; Avishek Adhikari; Sandra Maesta-Pereira; Anita Torossian; Ekayana Sethi; Alexandre H Kihara; Jonathan C Kao
Journal:  Sci Rep       Date:  2022-06-20       Impact factor: 4.996

4.  Signatures of rapid plasticity in hippocampal CA1 representations during novel experiences.

Authors:  James B Priestley; John C Bowler; Sebi V Rolotti; Stefano Fusi; Attila Losonczy
Journal:  Neuron       Date:  2022-04-20       Impact factor: 18.688

5.  A Probabilistic Framework for Decoding Behavior From in vivo Calcium Imaging Data.

Authors:  Guillaume Etter; Frederic Manseau; Sylvain Williams
Journal:  Front Neural Circuits       Date:  2020-05-15       Impact factor: 3.492

6.  Information-Theoretical Analysis of the Neural Code in the Rodent Temporal Lobe.

Authors:  Melisa B Maidana Capitán; Emilio Kropff; Inés Samengo
Journal:  Entropy (Basel)       Date:  2018-08-03       Impact factor: 2.524

7.  Bias-free estimation of information content in temporally sparse neuronal activity.

Authors:  Liron Sheintuch; Alon Rubin; Yaniv Ziv
Journal:  PLoS Comput Biol       Date:  2022-02-11       Impact factor: 4.475

8.  Robust information routing by dorsal subiculum neurons.

Authors:  Takuma Kitanishi; Ryoko Umaba; Kenji Mizuseki
Journal:  Sci Adv       Date:  2021-03-10       Impact factor: 14.136

  8 in total

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