Literature DB >> 29430471

Motion artifact detection and correction in functional near-infrared spectroscopy: a new hybrid method based on spline interpolation method and Savitzky-Golay filtering.

Sahar Jahani1,2, Seyed K Setarehdan2, David A Boas1,3, Meryem A Yücel1.   

Abstract

Motion artifact contamination in near-infrared spectroscopy (NIRS) data has become an important challenge in realizing the full potential of NIRS for real-life applications. Various motion correction algorithms have been used to alleviate the effect of motion artifacts on the estimation of the hemodynamic response function. While smoothing methods, such as wavelet filtering, are excellent in removing motion-induced sharp spikes, the baseline shifts in the signal remain after this type of filtering. Methods, such as spline interpolation, on the other hand, can properly correct baseline shifts; however, they leave residual high-frequency spikes. We propose a hybrid method that takes advantage of different correction algorithms. This method first identifies the baseline shifts and corrects them using a spline interpolation method or targeted principal component analysis. The remaining spikes, on the other hand, are corrected by smoothing methods: Savitzky-Golay (SG) filtering or robust locally weighted regression and smoothing. We have compared our new approach with the existing correction algorithms in terms of hemodynamic response function estimation using the following metrics: mean-squared error, peak-to-peak error ([Formula: see text]), Pearson's correlation ([Formula: see text]), and the area under the receiver operator characteristic curve. We found that spline-SG hybrid method provides reasonable improvements in all these metrics with a relatively short computational time. The dataset and the code used in this study are made available online for the use of all interested researchers.

Keywords:  Savitzky–Golay; motion artifact; near-infrared spectroscopy; robust locally weighted regression and smoothing; spline interpolation

Year:  2018        PMID: 29430471      PMCID: PMC5803523          DOI: 10.1117/1.NPh.5.1.015003

Source DB:  PubMed          Journal:  Neurophotonics        ISSN: 2329-423X            Impact factor:   3.593


  31 in total

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4.  Exploring frontal asymmetry using functional near-infrared spectroscopy: a preliminary study of the effects of social anxiety during interaction and performance tasks.

Authors:  Lori-Ann Tuscan; James D Herbert; Evan M Forman; Adrienne S Juarascio; Meltem Izzetoglu; Maria Schultheis
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5.  Compliant head probe for positioning electroencephalography electrodes and near-infrared spectroscopy optodes.

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Journal:  J Biomed Opt       Date:  2013-02       Impact factor: 3.170

6.  Estimation of optical pathlength through tissue from direct time of flight measurement.

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7.  System for long-term measurement of cerebral blood and tissue oxygenation on newborn infants by near infra-red transillumination.

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8.  A kurtosis-based wavelet algorithm for motion artifact correction of fNIRS data.

Authors:  Antonio M Chiarelli; Edward L Maclin; Monica Fabiani; Gabriele Gratton
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9.  Infant cortex responds to other humans from shortly after birth.

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  25 in total

1.  Temporal Derivative Distribution Repair (TDDR): A motion correction method for fNIRS.

Authors:  Frank A Fishburn; Ruth S Ludlum; Chandan J Vaidya; Andrei V Medvedev
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2.  Delta-9-tetrahydrocannabinol intoxication is associated with increased prefrontal activation as assessed with functional near-infrared spectroscopy: A report of a potential biomarker of intoxication.

Authors:  Jodi M Gilman; Meryem A Yücel; Gladys N Pachas; Kevin Potter; Nina Levar; Hannah Broos; Eve M Manghis; Randi M Schuster; A Eden Evins
Journal:  Neuroimage       Date:  2019-05-07       Impact factor: 6.556

3.  Optical imaging and spectroscopy for the study of the human brain: status report.

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4.  Brain correlates of motor complexity during observed and executed actions.

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6.  Comparison of Smoothing Filters in Analysis of EEG Data for the Medical Diagnostics Purposes.

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7.  Functional Near-Infrared Spectroscopy in the Study of Speech and Language Impairment Across the Life Span: A Systematic Review.

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Review 8.  Data Processing in Functional Near-Infrared Spectroscopy (fNIRS) Motor Control Research.

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9.  Adaptive algorithm utilizing acceptance rate for eliminating noisy epochs in block-design functional near-infrared spectroscopy data: application to study in attention deficit/hyperactivity disorder children.

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Journal:  Neurophotonics       Date:  2018-10-11       Impact factor: 3.593

10.  Cortical Activation During Shoulder and Finger Movements in Healthy Adults: A Functional Near-Infrared Spectroscopy (fNIRS) Study.

Authors:  Chieh-Ling Yang; Shannon B Lim; Sue Peters; Janice J Eng
Journal:  Front Hum Neurosci       Date:  2020-07-08       Impact factor: 3.169

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