Literature DB >> 29430370

Genetic variability in selected date palm (Phoenix dactylifera L.) cultivars of United Arab Emirates using ISSR and DAMD markers.

Fayas T Purayil1, Gabriel A Robert1,2, Kodiveri M Gothandam3, Shyam S Kurup1, Sreeramanan Subramaniam4, Abdul Jaleel Cheruth1.   

Abstract

Nine (9) different date palm (Phoenix dactylifera L.) cultivars from UAE, which differ in their flower timings were selected to determine the polymorphism and genetic relationship between these cultivars. Hereditary differences and interrelationships were assessed utilizing inter-simple sequence repeat (ISSR) and directed amplification of minisatellite DNA region (DAMD) primers. Analysis on eight DAMD and five ISSR markers produced total of 113 amplicon including 99 polymorphic and 14 monomorphic alleles with a polymorphic percentage of 85.45. The average polymorphic information content for the two-marker system was almost similar (DAMD, 0.445 and ISSR, 0.459). UPGMA based clustering of DAMD and ISSR revealed that mid-season cultivars, Mkh (Khlas) and MB (Barhee) grouped together to form a subcluster in both the marker systems. The genetic similarity analysis followed by clustering of the cumulative data from the DAMD and ISSR resulted in two major clusters with two early-season cultivars (ENg and Ekn), two mid-season cultivars (MKh and MB) and one late-season cultivar (Lkhs) in cluster 1, cluster 2 includes two late-season cultivars, one early-season cultivar and one mid-season cultivar. The cluster analysis of both DAMD and ISSR marker revealed that, the patterns of variation between some of the tested cultivars were similar in both DNA marker systems. Hence, the present study signifies the applicability of DAMD and ISSR marker system in detecting genetic diversity of date palm cultivars flowering at different seasons. This may facilitate the conservation and improvement of date palm cultivars in the future.

Entities:  

Keywords:  DAMD; Date palm (UAE); Genetic diversity; ISSR

Year:  2018        PMID: 29430370      PMCID: PMC5796938          DOI: 10.1007/s13205-018-1108-3

Source DB:  PubMed          Journal:  3 Biotech        ISSN: 2190-5738            Impact factor:   2.406


  14 in total

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Journal:  Genome       Date:  2002-10       Impact factor: 2.166

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Journal:  J Biosci       Date:  2005-12       Impact factor: 1.826

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Authors:  M Gupta; Y S Chyi; J Romero-Severson; J L Owen
Journal:  Theor Appl Genet       Date:  1994-12       Impact factor: 5.699

4.  PCR primed with VNTR core sequences yields species specific patterns and hypervariable probes.

Authors:  D D Heath; G K Iwama; R H Devlin
Journal:  Nucleic Acids Res       Date:  1993-12-11       Impact factor: 16.971

5.  The detection of disease clustering and a generalized regression approach.

Authors:  N Mantel
Journal:  Cancer Res       Date:  1967-02       Impact factor: 12.701

6.  SPAR profiles and genetic diversity amongst pomegranate (Punica granatum L.) genotypes.

Authors:  S A Ranade; T S Rana; D Narzary
Journal:  Physiol Mol Biol Plants       Date:  2009-05-14

7.  A simple method for DNA extraction from mature date palm leaves: impact of sand grinding and composition of lysis buffer.

Authors:  Ibrahim A Arif; Mohammad A Bakir; Haseeb A Khan; Anis Ahamed; Ahmad H Al Farhan; Ali A Al Homaidan; Mohammad Al Sadoon; Ali H Bahkali; Mohammad Shobrak
Journal:  Int J Mol Sci       Date:  2010-09-08       Impact factor: 5.923

8.  Molecular distinction amongst varieties of mulberry using RAPD and DAMD profiles.

Authors:  E Bhattacharya; S A Ranade
Journal:  BMC Plant Biol       Date:  2001-12-13       Impact factor: 4.215

9.  Variations in Hormones and Antioxidant Status in Relation to Flowering in Early, Mid, and Late Varieties of Date Palm (Phoenix dactylifera) of United Arab Emirates.

Authors:  Abdul J Cheruth; Shyam S Kurup; Sreeramanan Subramaniam
Journal:  ScientificWorldJournal       Date:  2015-06-16

10.  New microsatellite markers for assessment of genetic diversity in date palm (Phoenix dactylifera L.).

Authors:  Khaled Elmeer; Hina Sarwath; Joel Malek; Michael Baum; Aladdin Hamwieh
Journal:  3 Biotech       Date:  2011-05-27       Impact factor: 2.406

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Authors:  O A Khalil; R A Ibrahim; M Youssef
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2.  First chloroplast genomics study of Phoenix dactylifera (var. Naghal and Khanezi): A comparative analysis.

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Journal:  PLoS One       Date:  2018-07-31       Impact factor: 3.240

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Authors:  Hifzur Rahman; Prashant Vikram; Zied Hammami; Rakesh Kumar Singh
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