Literature DB >> 29428839

Unique insights to intrinsically disordered proteins provided by ion mobility mass spectrometry.

Dale Stuchfield1, Perdita Barran2.   

Abstract

Entire functional proteins as well as large regions of proteins lack structural elements which are resolvable via crystallography or NMR. These intrinsically disordered proteins (IDPs) or regions (IDRs) are often involved in cell regulation processes, for example in signalling hubs and as a result aberrant behaviour can cause or be representative of disease. As a consequence there is a pressing need to develop alternative structural methods for IDPs and the interactions that they may form with other proteins and/or with potential inhibitors of binding. One such method is ion mobility mass spectrometry (IM-MS) coupled with careful application of electrospray ionisation, which shows great promise as a technique that does not 'care' if a protein is structured or not. We highlight recent work which has employed IM-MS to study conformational heterogeneity in disordered proteins, and discuss the opportunities, as well as the challenges of this approach.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 29428839     DOI: 10.1016/j.cbpa.2018.01.007

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  13 in total

Review 1.  Features of molecular recognition of intrinsically disordered proteins via coupled folding and binding.

Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

2.  SLIM Ultrahigh Resolution Ion Mobility Spectrometry Separations of Isotopologues and Isotopomers Reveal Mobility Shifts due to Mass Distribution Changes.

Authors:  Roza Wojcik; Gabe Nagy; Isaac K Attah; Ian K Webb; Sandilya V B Garimella; Karl K Weitz; Adam Hollerbach; Matthew E Monroe; Marshall R Ligare; Felicity F Nielson; Randolph V Norheim; Ryan S Renslow; Thomas O Metz; Yehia M Ibrahim; Richard D Smith
Journal:  Anal Chem       Date:  2019-09-06       Impact factor: 6.986

3.  Exploring the Conformations and Binding Location of HMGA2·DNA Complexes Using Ion Mobility Spectrometry and 193 nm Ultraviolet Photodissociation Mass Spectrometry.

Authors:  Sarah N Sipe; Kevin Jeanne Dit Fouque; Alyssa Garabedian; Fenfei Leng; Francisco Fernandez-Lima; Jennifer S Brodbelt
Journal:  J Am Soc Mass Spectrom       Date:  2022-06-10       Impact factor: 3.262

Review 4.  Mass Spectrometry Methods for Measuring Protein Stability.

Authors:  Daniel D Vallejo; Carolina Rojas Ramírez; Kristine F Parson; Yilin Han; Varun V Gadkari; Brandon T Ruotolo
Journal:  Chem Rev       Date:  2022-03-22       Impact factor: 72.087

5.  Ion Mobility Mass Spectrometry Uncovers the Impact of the Patterning of Oppositely Charged Residues on the Conformational Distributions of Intrinsically Disordered Proteins.

Authors:  Rebecca Beveridge; Lukasz G Migas; Rahul K Das; Rohit V Pappu; Richard W Kriwacki; Perdita E Barran
Journal:  J Am Chem Soc       Date:  2019-03-12       Impact factor: 15.419

6.  Initial Protein Unfolding Events in Ubiquitin, Cytochrome c and Myoglobin Are Revealed with the Use of 213 nm UVPD Coupled to IM-MS.

Authors:  Alina Theisen; Rachelle Black; Davide Corinti; Jeffery M Brown; Bruno Bellina; Perdita E Barran
Journal:  J Am Soc Mass Spectrom       Date:  2018-06-13       Impact factor: 3.109

7.  Depicting Conformational Ensembles of α-Synuclein by Single Molecule Force Spectroscopy and Native Mass Spectroscopy.

Authors:  Roberta Corti; Claudia A Marrano; Domenico Salerno; Stefania Brocca; Antonino Natalello; Carlo Santambrogio; Giuseppe Legname; Francesco Mantegazza; Rita Grandori; Valeria Cassina
Journal:  Int J Mol Sci       Date:  2019-10-19       Impact factor: 5.923

Review 8.  The Disordered Cellular Multi-Tasker WIP and Its Protein-Protein Interactions: A Structural View.

Authors:  Chana G Sokolik; Nasrin Qassem; Jordan H Chill
Journal:  Biomolecules       Date:  2020-07-21

9.  Experimental Confirmation of a Topological Isomer of the Ubiquitous Au25(SR)18 Cluster in the Gas Phase.

Authors:  Elina Kalenius; Sami Malola; María Francisca Matus; Rania Kazan; Thomas Bürgi; Hannu Häkkinen
Journal:  J Am Chem Soc       Date:  2021-01-14       Impact factor: 15.419

Review 10.  Higher-order structural characterisation of native proteins and complexes by top-down mass spectrometry.

Authors:  Mowei Zhou; Carter Lantz; Kyle A Brown; Ying Ge; Ljiljana Paša-Tolić; Joseph A Loo; Frederik Lermyte
Journal:  Chem Sci       Date:  2020-10-20       Impact factor: 9.969

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