| Literature DB >> 29425236 |
Maria Dullaert-de Boer, Onno W Akkerman, Marloes Vermeer, Dorine L J Hess, Huib A M Kerstjens, Richard M Anthony, Tjip S van der Werf, Dick van Soolingen, Adri G M van der Zanden.
Abstract
[This corrects the article DOI: 10.1371/journal.pone.0190847.].Entities:
Year: 2018 PMID: 29425236 PMCID: PMC5806897 DOI: 10.1371/journal.pone.0192946
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primers and probes used.
| Gastro-intestinal multiplex rtPCRs | |||
|---|---|---|---|
| Pathogen target | Primers /probe | Primers/ probe 5’→3’ | reference |
| SE-ttr-6F | CTC ACC AGG AGA TTA CAA CAT GG | [12] | |
| SE-ttr-4R | AGC TCA GAC CAA AAG TGA CCA TC | ||
| SE-ttr-5TP | CAC CGA CGG CGA GAC CGA CTT T | ||
| CJ-mapA-F | CTG GTG GTT TTG AAG CAA AGA TT | [13] | |
| CJ-mapA-R | CAA TAC CAG TGT CTA AAG TGC GTT TAT | ||
| CJ-mapA-MGB | AAT TCC AAC ATC GCT AAT G | ||
| Cc-ceuE-fw | AAG CTC TTA TTG TTC TAA CCA ATT CTA ACA | [14] | |
| Cc-ceuE4-re | TCC ATG TGT GCC TAC TTT TAC ATT | ||
| Cc-ceuE-pr-FAM | TTG GAC CTC AAT CTC GCT TTG GAA TCA TT | ||
| IpaH-U1 | CCT TTT CCG CGT TCC TTG A | [14] | |
| IpaH-L1 | CGG AAT CCG GAG GTA TTG C | ||
| IpaH-TM | CGC CTT TCC GAT ACC GTC TCT GCA | ||
| ipaH-TM-610 | CGC CTT TCC GAT ACC GTC TCT GCA | ||
| ystB_F | TAG CCG CTG AGA TAA ACA GAA AAG | [15–17] | |
| ystB_R | CAT CAT TTT CTT CTG AAG GCG A | ||
| ail-P | CATAAAGGCTAACATATTC | ||
| ystB_P | TGCGATACTCAGACCC | ||
| Ye-ail-fw1 | GGGCCATCTTTCCGCATTA | ||
| Ye-ail-fw3 | GGGCCATCTTTCCGCAT | ||
| Ye-ail-re | CCGTATGCCATTGACGTCTTACT | ||
| Shiga-toxin producing | Stx1F934-mod | TGG CAT TAA TAC TGA ATT GTC ATC ATC | [18] |
| Stx1F934F-mod1d | TGG CAT TAA TAT TAA ATT GCC ATC AT | ||
| Stx2F-LvI | CCG GAA TGC AAA TCA GTC GT | ||
| Stx1R1042-G | GCG TAA TCC CAC GGA CTC TTC | ||
| Stx1R1042-modC | GCG TAA TCC CAC GCA CTC TT | ||
| Stx1R1042-mod1d | GAG TAA TCC CAC GCC CAC TTC | ||
| Stx2R-G-LvI | ACC ACT GAA CTC CAT TAA CGC C | ||
| Stx2R-A-LvI | T | ||
| Stx1P990-mod-MGB | TTC CTT CTA TGT GTC CGG CAG | ||
| Stx1P990-mod1c-MGB | CCT TCT ATG TGC CCG GTA G | ||
| Stx1P990-mod1d-MGB | TCC TTC TAT GTG CCC GAC AG | ||
| Stx2P-LvI-MGB | ACT CAC TGG TTT CAT CAT A | ||
| Stx2F-mod4-SLE | CAG GAT CTT ACT GAA CCA AAC CAA T | ||
| Stx2R-mod4-SLE | CAT CCT CAT TAT ACT TGG AAA ACT CAA TT | ||
| Stx2P-mod3-SLE | CCA TGG CGG CGG ATT GTG C | ||
| TM-Giardia-80F | GAC GGC TCA GGA CAA CGG TT | [19] | |
| TM-Giardia-127R | TTG CCA GCG GTG TCC G | ||
| TM-Giardia-105 | CCC GCG GCG GTC CCT GCT AG | ||
| TM-Crypto-fw | CGCTTCTCTAGCCTTTCATGA | [19] | |
| TM-Crypto-re | CTTCACGTGTGTTTGCCAAT | ||
| Crypto-pr-610 | CCAATCACAGAATCATCAGAATCGACTGGTATC | ||
| Df-124-fw | CAACGGATGTCTTGGCTCTTTA | [20] | |
| Df-221-re | TGCATTCAAAGATCGAACTTATCAC | ||
| Df-172-pr-vic | CAATTCTAGCCGCTTAT | ||