Literature DB >> 29425236

Correction: Variability and cost implications of three generations of the Roche LightCycler® 480.

Maria Dullaert-de Boer, Onno W Akkerman, Marloes Vermeer, Dorine L J Hess, Huib A M Kerstjens, Richard M Anthony, Tjip S van der Werf, Dick van Soolingen, Adri G M van der Zanden.   

Abstract

[This corrects the article DOI: 10.1371/journal.pone.0190847.].

Entities:  

Year:  2018        PMID: 29425236      PMCID: PMC5806897          DOI: 10.1371/journal.pone.0192946

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


In Table 1 the names and sequences of the primer and probes are formatted incorrectly. Please see the corrected Table 1 here.
Table 1

Primers and probes used.

Gastro-intestinal multiplex rtPCRs
Pathogen targetPrimers /probePrimers/ probe 5’→3’reference
Salmonella speciesSE-ttr-6FCTC ACC AGG AGA TTA CAA CAT GG[12]
SE-ttr-4RAGC TCA GAC CAA AAG TGA CCA TC
SE-ttr-5TPCAC CGA CGG CGA GAC CGA CTT T
Campylobacter jejuniCJ-mapA-FCTG GTG GTT TTG AAG CAA AGA TT[13]
CJ-mapA-RCAA TAC CAG TGT CTA AAG TGC GTT TAT
CJ-mapA-MGBAAT TCC AAC ATC GCT AAT G
Campylobacter coliCc-ceuE-fwAAG CTC TTA TTG TTC TAA CCA ATT CTA ACA[14]
Cc-ceuE4-reTCC ATG TGT GCC TAC TTT TAC ATT
Cc-ceuE-pr-FAMTTG GAC CTC AAT CTC GCT TTG GAA TCA TT
Shigella dysenteriae / Enteroinvasive Escherichia coli (EIEC)IpaH-U1CCT TTT CCG CGT TCC TTG A[14]
IpaH-L1CGG AAT CCG GAG GTA TTG C
IpaH-TMCGC CTT TCC GAT ACC GTC TCT GCA
ipaH-TM-610CGC CTT TCC GAT ACC GTC TCT GCA
Yersinia enterocoliticaystB_FTAG CCG CTG AGA TAA ACA GAA AAG[15–17]
ystB_RCAT CAT TTT CTT CTG AAG GCG A
ail-PCATAAAGGCTAACATATTC
ystB_PTGCGATACTCAGACCC
Ye-ail-fw1GGGCCATCTTTCCGCATTA
Ye-ail-fw3GGGCCATCTTTCCGCAT
Ye-ail-reCCGTATGCCATTGACGTCTTACT
Shiga-toxin producing Escherichia coli (STEC)Stx1F934-modTGG CAT TAA TAC TGA ATT GTC ATC ATC[18]
Stx1F934F-mod1dTGG CAT TAA TAT TAA ATT GCC ATC AT
Stx2F-LvICCG GAA TGC AAA TCA GTC GT
Stx1R1042-GGCG TAA TCC CAC GGA CTC TTC
Stx1R1042-modCGCG TAA TCC CAC GCA CTC TT
Stx1R1042-mod1dGAG TAA TCC CAC GCC CAC TTC
Stx2R-G-LvIACC ACT GAA CTC CAT TAA CGC C
Stx2R-A-LvITAC CAC TAA ACT CCA TTA ACG CCA
Stx1P990-mod-MGBTTC CTT CTA TGT GTC CGG CAG
Stx1P990-mod1c-MGBCCT TCT ATG TGC CCG GTA G
Stx1P990-mod1d-MGBTCC TTC TAT GTG CCC GAC AG
Stx2P-LvI-MGBACT CAC TGG TTT CAT CAT A
Stx2F-mod4-SLECAG GAT CTT ACT GAA CCA AAC CAA T
Stx2R-mod4-SLECAT CCT CAT TAT ACT TGG AAA ACT CAA TT
Stx2P-mod3-SLECCA TGG CGG CGG ATT GTG C
Giardia lambliaTM-Giardia-80FGAC GGC TCA GGA CAA CGG TT[19]
TM-Giardia-127RTTG CCA GCG GTG TCC G
TM-Giardia-105CCC GCG GCG GTC CCT GCT AG
Cryptosporidium speciesTM-Crypto-fwCGCTTCTCTAGCCTTTCATGA[19]
TM-Crypto-reCTTCACGTGTGTTTGCCAAT
Crypto-pr-610CCAATCACAGAATCATCAGAATCGACTGGTATC
Dientamoeba fragillisDf-124-fwCAACGGATGTCTTGGCTCTTTA[20]
Df-221-reTGCATTCAAAGATCGAACTTATCAC
Df-172-pr-vicCAATTCTAGCCGCTTAT
  1 in total

1.  Variability and cost implications of three generations of the Roche LightCycler® 480.

Authors:  Maria Dullaert-de Boer; Onno W Akkerman; Marloes Vermeer; Dorine L J Hess; Huib A M Kerstjens; Richard M Anthony; Tjip S van der Werf; Dick van Soolingen; Adri G M van der Zanden
Journal:  PLoS One       Date:  2018-01-12       Impact factor: 3.240

  1 in total

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