| Literature DB >> 29424751 |
Jin Sen Lu, Hong Wang, Fei Fei Yuan, Le Le Wu, Bin Wang1, Dong Qing Ye.
Abstract
OBJECTIVE: To evaluate the association between the tumor necrosis factor superfamily member 4 (TNFSF4) gene polymorphisms and common cardiovascular and cerebrovascular diseases.Entities:
Mesh:
Substances:
Year: 2018 PMID: 29424751 PMCID: PMC5864823 DOI: 10.14744/AnatolJCardiol.2017.8069
Source DB: PubMed Journal: Anatol J Cardiol ISSN: 2149-2263 Impact factor: 1.596
Figure 1Flow diagram of studies included in this meta-analysis
Characteristics of eligible studies in this meta-analysis
| SNP | Reference | Year | Country | Ethnicity | Genotyping method | Design | Genotype (Case/Control) | HWE | NOS | ||
|---|---|---|---|---|---|---|---|---|---|---|---|
| GG | GA | AA | |||||||||
| rs3850641 | Cheng et al.20 | 2011 | China | Chinese | PCR-RFLP | HB | 19/31 | 88/215 | 178/399 | yes | 8 |
| rs3850641 | Chen et al.21 | 2011 | China | Chinese | PCR-RFLP | HB | 7/3 | 51/53 | 162/179 | yes | 7 |
| rs3850641 | Olofsson et al. ( | 2009 | Sweden | Caucasian | Fluorescence-based allelic | ||||||
| discrimination method | HB | 17/26 | 163/163 | 417/408 | yes | 7 | |||||
| rs3850641 | Olofsson et al. ( | 2009 | Sweden | Caucasian | Fluorescence-based allelic | ||||||
| discrimination method | HB | 2/13 | 70/185 | 255/581 | yes | 7 | |||||
| rs3850641 | Olofsson et al. ( | 2009 | Sweden | Caucasian | Fluorescence-based allelic | ||||||
| discrimination method | HB | 3/2 | 67/30 | 169/106 | yes | 7 | |||||
| rs3850641 | Huang et al.23 | 2015 | China | Chinese | TaqMan-PCR | PB | 18/18 | 142/153 | 350/314 | yes | 7 |
| rs3850641 | Malarstig et al.24 | 2008 | USA | Caucasian | Fluorescence-based allelic | ||||||
| discrimination method | PB | 11/67 | 92/697 | 241/1622 | yes | 8 | |||||
| rs3850641 | Wang et al.25 | 2010 | Sweden | Caucasian | PCR | HB | 18/20 | 53/44 | 170/148 | yes | 7 |
| rs3850641 | Zhao et al.26 | 2010 | China | Chinese | PCR-RFLP | HB | 91/17 | 190/50 | 171/71 | yes | 7 |
| rs3850641 | Li et al.27 | 2008 | China | Chinese | PCR | HB | 6/2 | 64/65 | 195/280 | yes | 7 |
| rs3850641 | Feng et al.28 | 2012 | China | Chinese | TaqMan-PCR | HB | 11/19 | 104/117 | 270/246 | yes | 8 |
| rs17568 | Huang et al.29 | 2014 | China | Chinese | PCR | HB | 46/43 | 196/150 | 208/185 | yes | 7 |
| rs17568 | Mehrnoosh et al.30 | 2015 | Iran | Caucasian | PCR | HB | 45/44 | 2/10 | 53/46 | yes | 8 |
| rs17568 | Chen et al.21 | 2011 | China | Chinese | PCR-RFLP | HB | 19/13 | 126/101 | 90/106 | yes | 7 |
HWE - Hardy Weinberg equilibrium; HB - hospital based; PCR - polymerase chain reaction; PB - population based; RFLP - restriction fragment length polymorphism; SNP - single nucleotide polymorphism
Summary estimates for the OR of TNFSF4 (rs3850641 and rs17568) polymorphism in various genetic model contrasts
| Comparison | SNP | No. of studies | Test of association | Model | Test of heterogeneity | Begg’s Test | Egger’s test | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (CI 95%) | Z | P | Q | P-value | I2 (%) | Z | P | T | P | ||||
| G vs. A | rs3850641 | 11 | 1.02 (0.89-1.17) | 0.31 | 0.75 | R | 26.75 | 0.003 | 63 | 1.40 | 0.161 | -1.78 | 0.110 |
| rs17568 | 3 | 1.09 (0.89-1.33) | 0.82 | 0.41 | R | 3.09 | 0.213 | 35 | 0.00 | 1.000 | 0.25 | 0.844 | |
| GG vs. AA | rs3850641 | 11 | 1.05 (0.74-1.50) | 0.27 | 0.78 | R | 20.22 | 0.03 | 51 | 1.09 | 0.276 | 0.45 | 0.664 |
| rs17568 | 3 | 1.04 (0.74-1.46) | 0.23 | 0.81 | R | 2.13 | 0.35 | 6 | 0.00 | 1.000 | -1.34 | 0.407 | |
| GA vs. AA | rs3850641 | 11 | 1.00 (0.88-1.13) | 0.08 | 0.94 | R | 14.77 | 0.14 | 32 | 1.40 | 0.161 | -3.00 | 0.015 |
| rs17568 | 3 | 1.07 (0.62-1.83) | 0.23 | 0.82 | R | 6.97 | 0.03 | 71 | 0.00 | 1.000 | 2.65 | 0.230 | |
| GG vs. GA+AA | rs3850641 | 11 | 1.04 (0.76-1.43) | 0.24 | 0.81 | R | 16.74 | 0.08 | 40 | 1.09 | 0.276 | 0.53 | 0.611 |
| rs17568 | 3 | 1.01 (0.74-1.39) | 0.09 | 0.93 | R | 1.11 | 0.57 | 0 | 1.04 | 0.296 | -1552.01 | 0.000 | |
| GG+GA vs. AA | rs3850641 | 11 | 1.01 (0.88-1.17) | 0.20 | 0.84 | R | 21.20 | 0.02 | 53 | 1.56 | 0.119 | -2.62 | 0.028 |
| rs17568 | 3 | 1.13 (0.82-1.56) | 0.77 | 0.44 | R | 4.17 | 0.12 | 52 | 0.00 | 1.000 | 0.63 | 0.641 | |
Statistic methods: Z test was applied to test diversity of OR and chi-square test-based Q statistic test was applied to assess the heterogeneity within the case-control studies. The random model was applied in this study because it is more conservative than the fixed model
Figure 2Forest plot of TNFSF4 polymorphism (rs3850641 and rs17568) with CHD and stroke in allele contrast model
Figure 6Forest plot of TNFSF4 polymorphism (rs3850641 and rs17568) with CHD and stroke in recessive model
Figure 7Publication bias in studies of the association between the TNFSF4 polymorphism (rs3850641) and the risk of CHD and stroke assessed by funnel plot for allele contrast model
Figure 8Sensibility analysis in studies of the association between the TNFSF4 polymorphism (rs3850641) and the risk of CHD and stroke for allele contrast model