Literature DB >> 29422693

Bayesian inference on quasi-sparse count data.

Jyotishka Datta1, David B Dunson2.   

Abstract

There is growing interest in analysing high-dimensional count data, which often exhibit quasi-sparsity corresponding to an overabundance of zeros and small nonzero counts. Existing methods for analysing multivariate count data via Poisson or negative binomial log-linear hierarchical models with zero-inflation cannot flexibly adapt to quasi-sparse settings. We develop a new class of continuous local-global shrinkage priors tailored to quasi-sparse counts. Theoretical properties are assessed, including flexible posterior concentration and stronger control of false discoveries in multiple testing. Simulation studies demonstrate excellent small-sample properties relative to competing methods. We use the method to detect rare mutational hotspots in exome sequencing data and to identify North American cities most impacted by terrorism.

Entities:  

Keywords:  Count data; High-dimensional data; Local-global shrinkage; Rare variant; Shrinkage prior; Zero-inflation

Year:  2016        PMID: 29422693      PMCID: PMC5793680          DOI: 10.1093/biomet/asw053

Source DB:  PubMed          Journal:  Biometrika        ISSN: 0006-3444            Impact factor:   2.445


  4 in total

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Authors:  J K Pritchard
Journal:  Am J Hum Genet       Date:  2001-06-12       Impact factor: 11.025

2.  Generalized Beta Mixtures of Gaussians.

Authors:  Artin Armagan; David B Dunson; Merlise Clyde
Journal:  Adv Neural Inf Process Syst       Date:  2011

3.  PIK3CA is implicated as an oncogene in ovarian cancer.

Authors:  L Shayesteh; Y Lu; W L Kuo; R Baldocchi; T Godfrey; C Collins; D Pinkel; B Powell; G B Mills; J W Gray
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

4.  Scan-statistic approach identifies clusters of rare disease variants in LRP2, a gene linked and associated with autism spectrum disorders, in three datasets.

Authors:  Iuliana Ionita-Laza; Vlad Makarov; Joseph D Buxbaum
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  4 in total

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