Literature DB >> 29421443

Epigenetic editing: How cutting-edge targeted epigenetic modification might provide novel avenues for autoimmune disease therapy.

Matlock A Jeffries1.   

Abstract

Autoimmune diseases are enigmatic and complex, and most been associated with epigenetic changes. Epigenetics describes changes in gene expression related to environmental influences mediated by a variety of effectors that alter the three-dimensional structure of chromatin and facilitate transcription factor or repressor binding. Recent years have witnessed a dramatic change and acceleration in epigenetic editing approaches, spurred on by the discovery and later development of the CRISPR/Cas9 system as a highly modular and efficient site-specific DNA binding domain. The purpose of this article is to offer a review of epigenetic editing approaches to date, with a focus on alterations of DNA methylation, and to describe a few prominent published examples of epigenetic editing. We will also offer as an example work done by our laboratory demonstrating epigenetic editing of the FOXP3 gene in human T cells. Finally, we discuss briefly the future of epigenetic editing in autoimmune disease.
Copyright © 2018 Elsevier Inc. All rights reserved.

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Year:  2018        PMID: 29421443      PMCID: PMC6078821          DOI: 10.1016/j.clim.2018.02.001

Source DB:  PubMed          Journal:  Clin Immunol        ISSN: 1521-6616            Impact factor:   3.969


  91 in total

1.  Extrathymic generation of regulatory T cells in placental mammals mitigates maternal-fetal conflict.

Authors:  Robert M Samstein; Steven Z Josefowicz; Aaron Arvey; Piper M Treuting; Alexander Y Rudensky
Journal:  Cell       Date:  2012-07-06       Impact factor: 41.582

2.  Perceptions of epigenetics.

Authors:  Adrian Bird
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

3.  Specific transcriptional enhancement of inducible nitric oxide synthase by targeted promoter demethylation.

Authors:  David J Gregory; Yiming Zhang; Lester Kobzik; Alexey V Fedulov
Journal:  Epigenetics       Date:  2013-09-05       Impact factor: 4.528

4.  Breaking the code of DNA binding specificity of TAL-type III effectors.

Authors:  Jens Boch; Heidi Scholze; Sebastian Schornack; Angelika Landgraf; Simone Hahn; Sabine Kay; Thomas Lahaye; Anja Nickstadt; Ulla Bonas
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

Review 5.  Editing the epigenome: technologies for programmable transcription and epigenetic modulation.

Authors:  Pratiksha I Thakore; Joshua B Black; Isaac B Hilton; Charles A Gersbach
Journal:  Nat Methods       Date:  2016-02       Impact factor: 28.547

Review 6.  Dynamics and Context-Dependent Roles of DNA Methylation.

Authors:  Christina Ambrosi; Massimiliano Manzo; Tuncay Baubec
Journal:  J Mol Biol       Date:  2017-02-16       Impact factor: 5.469

7.  A validated regulatory network for Th17 cell specification.

Authors:  Maria Ciofani; Aviv Madar; Carolina Galan; Maclean Sellars; Kieran Mace; Florencia Pauli; Ashish Agarwal; Wendy Huang; Christopher N Parkhurst; Michael Muratet; Kim M Newberry; Sarah Meadows; Alex Greenfield; Yi Yang; Preti Jain; Francis K Kirigin; Carmen Birchmeier; Erwin F Wagner; Kenneth M Murphy; Richard M Myers; Richard Bonneau; Dan R Littman
Journal:  Cell       Date:  2012-09-25       Impact factor: 41.582

8.  CRISPR RNA-guided activation of endogenous human genes.

Authors:  Morgan L Maeder; Samantha J Linder; Vincent M Cascio; Yanfang Fu; Quan H Ho; J Keith Joung
Journal:  Nat Methods       Date:  2013-07-25       Impact factor: 28.547

9.  Targeted DNA demethylation and activation of endogenous genes using programmable TALE-TET1 fusion proteins.

Authors:  Morgan L Maeder; James F Angstman; Marcy E Richardson; Samantha J Linder; Vincent M Cascio; Shengdar Q Tsai; Quan H Ho; Jeffry D Sander; Deepak Reyon; Bradley E Bernstein; Joseph F Costello; Miles F Wilkinson; J Keith Joung
Journal:  Nat Biotechnol       Date:  2013-10-09       Impact factor: 54.908

Review 10.  Off-target Effects in CRISPR/Cas9-mediated Genome Engineering.

Authors:  Xiao-Hui Zhang; Louis Y Tee; Xiao-Gang Wang; Qun-Shan Huang; Shi-Hua Yang
Journal:  Mol Ther Nucleic Acids       Date:  2015-11-17       Impact factor: 10.183

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  13 in total

Review 1.  Epigenetic Control of Scleroderma: Current Knowledge and Future Perspectives.

Authors:  Pei-Suen Tsou
Journal:  Curr Rheumatol Rep       Date:  2019-12-07       Impact factor: 4.592

Review 2.  Epigenetic Aspects and Prospects in Autoimmune Hepatitis.

Authors:  Albert J Czaja
Journal:  Front Immunol       Date:  2022-06-30       Impact factor: 8.786

3.  The Activation of Protamine 1 Using Epigenome Editing Decreases the Proliferation of Tumorigenic Cells.

Authors:  Hadjer Namous; Camila Urbano Braz; Yiding Wang; Hasan Khatib
Journal:  Front Genome Ed       Date:  2022-06-16

4.  Missing Causality and Heritability of Autoimmune Hepatitis.

Authors:  Albert J Czaja
Journal:  Dig Dis Sci       Date:  2022-10-19       Impact factor: 3.487

Review 5.  Emerging Insights into the Impact of Air Pollution on Immune-Mediated Asthma Pathogenesis.

Authors:  J A Tuazon; B Kilburg-Basnyat; L M Oldfield; R Wiscovitch-Russo; K Dunigan-Russell; A V Fedulov; K J Oestreich; K M Gowdy
Journal:  Curr Allergy Asthma Rep       Date:  2022-04-08       Impact factor: 4.919

Review 6.  Osteoarthritis year in review 2017: genetics and epigenetics.

Authors:  M J Peffers; P Balaskas; A Smagul
Journal:  Osteoarthritis Cartilage       Date:  2017-10-06       Impact factor: 6.576

Review 7.  Epigenetic regulation of the innate immune response to infection.

Authors:  Qian Zhang; Xuetao Cao
Journal:  Nat Rev Immunol       Date:  2019-07       Impact factor: 53.106

Review 8.  Pathogenic Roles of Autoantibodies and Aberrant Epigenetic Regulation of Immune and Connective Tissue Cells in the Tissue Fibrosis of Patients with Systemic Sclerosis.

Authors:  Chang-Youh Tsai; Song-Chou Hsieh; Tsai-Hung Wu; Ko-Jen Li; Chieh-Yu Shen; Hsien-Tzung Liao; Cheng-Han Wu; Yu-Min Kuo; Cheng-Shiun Lu; Chia-Li Yu
Journal:  Int J Mol Sci       Date:  2020-04-27       Impact factor: 5.923

9.  The applications of DNA methylation as a biomarker in kidney transplantation: a systematic review.

Authors:  Iacopo Cristoferi; Tommaso Antonio Giacon; Karin Boer; Myrthe van Baardwijk; Flavia Neri; Manuela Campisi; Hendrikus J A N Kimenai; Marian C Clahsen-van Groningen; Sofia Pavanello; Lucrezia Furian; Robert C Minnee
Journal:  Clin Epigenetics       Date:  2022-02-07       Impact factor: 6.551

Review 10.  Non-Coding RNA in Systemic Sclerosis: A Valuable Tool for Translational and Personalized Medicine.

Authors:  Marta Rusek; Dorota Krasowska
Journal:  Genes (Basel)       Date:  2021-08-24       Impact factor: 4.096

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