Literature DB >> 29420224

Precision Oncology Decision Support: Current Approaches and Strategies for the Future.

Katherine C Kurnit1, Ecaterina E Ileana Dumbrava2, Beate Litzenburger3,4, Yekaterina B Khotskaya3, Amber M Johnson3, Timothy A Yap2, Jordi Rodon2, Jia Zeng3, Md Abu Shufean3, Ann M Bailey3, Nora S Sánchez3, Vijaykumar Holla3, John Mendelsohn3,5, Kenna Mills Shaw3, Elmer V Bernstam6, Gordon B Mills3,7, Funda Meric-Bernstam8,3,9.   

Abstract

With the increasing availability of genomics, routine analysis of advanced cancers is now feasible. Treatment selection is frequently guided by the molecular characteristics of a patient's tumor, and an increasing number of trials are genomically selected. Furthermore, multiple studies have demonstrated the benefit of therapies that are chosen based upon the molecular profile of a tumor. However, the rapid evolution of genomic testing platforms and emergence of new technologies make interpreting molecular testing reports more challenging. More sophisticated precision oncology decision support services are essential. This review outlines existing tools available for health care providers and precision oncology teams and highlights strategies for optimizing decision support. Specific attention is given to the assays currently available for molecular testing, as well as considerations for interpreting alteration information. This article also discusses strategies for identifying and matching patients to clinical trials, current challenges, and proposals for future development of precision oncology decision support. Clin Cancer Res; 24(12); 2719-31. ©2018 AACR. ©2018 American Association for Cancer Research.

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Year:  2018        PMID: 29420224      PMCID: PMC6004235          DOI: 10.1158/1078-0432.CCR-17-2494

Source DB:  PubMed          Journal:  Clin Cancer Res        ISSN: 1078-0432            Impact factor:   12.531


  67 in total

1.  Initiation of a formalized precision medicine program in gynecologic oncology.

Authors:  Camille C Gunderson; Michelle R Rowland; Deborah L Wright; Kelsi L Andrade; Robert S Mannel; D Scott McMeekin; Kathleen N Moore
Journal:  Gynecol Oncol       Date:  2016-04       Impact factor: 5.482

2.  Estrogen receptor (ER) mRNA and ER-related gene expression in breast cancers that are 1% to 10% ER-positive by immunohistochemistry.

Authors:  Takayuki Iwamoto; Daniel Booser; Vicente Valero; James L Murray; Kimberly Koenig; Francisco J Esteva; Naoto T Ueno; Jie Zhang; Weiwei Shi; Yuan Qi; Junji Matsuoka; Elliana J Yang; Gabriel N Hortobagyi; Christos Hatzis; W Fraser Symmans; Lajos Pusztai
Journal:  J Clin Oncol       Date:  2012-01-30       Impact factor: 44.544

3.  Hyperprogressors after Immunotherapy: Analysis of Genomic Alterations Associated with Accelerated Growth Rate.

Authors:  Shumei Kato; Aaron Goodman; Vighnesh Walavalkar; Donald A Barkauskas; Andrew Sharabi; Razelle Kurzrock
Journal:  Clin Cancer Res       Date:  2017-03-28       Impact factor: 12.531

4.  Key Lessons Learned from Moffitt's Molecular Tumor Board: The Clinical Genomics Action Committee Experience.

Authors:  Todd C Knepper; Gillian C Bell; J Kevin Hicks; Eric Padron; Jamie K Teer; Teresa T Vo; Nancy K Gillis; Neil T Mason; Howard L McLeod; Christine M Walko
Journal:  Oncologist       Date:  2017-02-08

5.  First-line crizotinib versus chemotherapy in ALK-positive lung cancer.

Authors:  Benjamin J Solomon; Tony Mok; Dong-Wan Kim; Yi-Long Wu; Kazuhiko Nakagawa; Tarek Mekhail; Enriqueta Felip; Federico Cappuzzo; Jolanda Paolini; Tiziana Usari; Shrividya Iyer; Arlene Reisman; Keith D Wilner; Jennifer Tursi; Fiona Blackhall
Journal:  N Engl J Med       Date:  2014-12-04       Impact factor: 91.245

6.  Implementation of a Molecular Tumor Board: The Impact on Treatment Decisions for 35 Patients Evaluated at Dartmouth-Hitchcock Medical Center.

Authors:  Laura J Tafe; Ivan P Gorlov; Francine B de Abreu; Joel A Lefferts; Xiaoying Liu; Jason R Pettus; Jonathan D Marotti; Kasia J Bloch; Vincent A Memoli; Arief A Suriawinata; Konstantin H Dragnev; Camilo E Fadul; Gary N Schwartz; Clinton R Morgan; Britt M Holderness; Jason D Peterson; Gregory J Tsongalis; Todd W Miller; Mary D Chamberlin
Journal:  Oncologist       Date:  2015-07-23

Review 7.  Building a personalized medicine infrastructure at a major cancer center.

Authors:  Funda Meric-Bernstam; Carol Farhangfar; John Mendelsohn; Gordon B Mills
Journal:  J Clin Oncol       Date:  2013-04-15       Impact factor: 44.544

8.  Breast Cancer Experience of the Molecular Tumor Board at the University of California, San Diego Moores Cancer Center.

Authors:  Barbara A Parker; Maria Schwaederlé; Michael D Scur; Sarah G Boles; Teresa Helsten; Rupa Subramanian; Richard B Schwab; Razelle Kurzrock
Journal:  J Oncol Pract       Date:  2015-08-04       Impact factor: 3.840

9.  Transcriptome sequencing to detect gene fusions in cancer.

Authors:  Christopher A Maher; Chandan Kumar-Sinha; Xuhong Cao; Shanker Kalyana-Sundaram; Bo Han; Xiaojun Jing; Lee Sam; Terrence Barrette; Nallasivam Palanisamy; Arul M Chinnaiyan
Journal:  Nature       Date:  2009-01-11       Impact factor: 49.962

10.  Use of dedicated gene panel sequencing using next generation sequencing to improve the personalized care of lung cancer.

Authors:  Coureche Guillaume Kaderbhai; Romain Boidot; Françoise Beltjens; Sandy Chevrier; Laurent Arnould; Laure Favier; Aurélie Lagrange; Bruno Coudert; François Ghiringhelli
Journal:  Oncotarget       Date:  2016-04-26
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  21 in total

Review 1.  Integration of microbiology, molecular pathology, and epidemiology: a new paradigm to explore the pathogenesis of microbiome-driven neoplasms.

Authors:  Tsuyoshi Hamada; Jonathan A Nowak; Danny A Milner; Mingyang Song; Shuji Ogino
Journal:  J Pathol       Date:  2019-02-20       Impact factor: 7.996

2.  Clinical decision support for therapeutic decision-making in cancer: A systematic review.

Authors:  Melissa Beauchemin; Meghan T Murray; Lillian Sung; Dawn L Hershman; Chunhua Weng; Rebecca Schnall
Journal:  Int J Med Inform       Date:  2019-08-12       Impact factor: 4.046

3.  Developing a Data Quality Standard Primer for Cardiovascular Risk Assessment from Electronic Health Record Data Using the DataGauge Process.

Authors:  Franck Diaz-Garelli; Andrew Long; Michael P Bancks; Alain G Bertoni; Adhithya Narayanan; Brian J Wells
Journal:  AMIA Annu Symp Proc       Date:  2022-02-21

Review 4.  How Machine Learning Will Transform Biomedicine.

Authors:  Jeremy Goecks; Vahid Jalili; Laura M Heiser; Joe W Gray
Journal:  Cell       Date:  2020-04-02       Impact factor: 41.582

5.  Identification of Actionable Genomic Alterations Using Circulating Cell-Free DNA.

Authors:  Nora S Sánchez; Michael P Kahle; Ann Marie Bailey; Chetna Wathoo; Kavitha Balaji; Mehmet Esat Demirhan; Dong Yang; Milind Javle; Ahmed Kaseb; Cathy Eng; Vivek Subbiah; Filip Janku; Victoria M Raymond; Richard B Lanman; Kenna R Mills Shaw; Funda Meric-Bernstam
Journal:  JCO Precis Oncol       Date:  2019-09-24

6.  Workflow Differences Affect Data Accuracy in Oncologic EHRs: A First Step Toward Detangling the Diagnosis Data Babel.

Authors:  Franck Diaz-Garelli; Roy Strowd; Virginia L Lawson; Maria E Mayorga; Brian J Wells; Thomas W Lycan; Umit Topaloglu
Journal:  JCO Clin Cancer Inform       Date:  2020-06

7.  Genomic, Transcriptomic, and Proteomic Profiling of Metastatic Breast Cancer.

Authors:  Argun Akcakanat; Xiaofeng Zheng; Christian X Cruz Pico; Tae-Beom Kim; Ken Chen; Anil Korkut; Aysegul Sahin; Vijaykumar Holla; Emily Tarco; Gopal Singh; Senthil Damodaran; Gordon B Mills; Ana Maria Gonzalez-Angulo; Funda Meric-Bernstam
Journal:  Clin Cancer Res       Date:  2021-03-29       Impact factor: 12.531

8.  Revisiting social MPE: an integration of molecular pathological epidemiology and social science in the new era of precision medicine.

Authors:  Jin Dai; Akihiro Nishi; Nathan Tran; Yasumasa Yamamoto; George Dewey; Tomotaka Ugai; Shuji Ogino
Journal:  Expert Rev Mol Diagn       Date:  2021-07-26       Impact factor: 5.670

9.  Criteria-based curation of a therapy-focused compendium to support treatment recommendations in precision oncology.

Authors:  Frank P Lin; Subotheni Thavaneswaran; John P Grady; Mandy Ballinger; Maya Kansara; Samantha R Oakes; Jayesh Desai; Chee Khoon Lee; John Simes; David M Thomas
Journal:  NPJ Precis Oncol       Date:  2021-06-23

10.  First-in-Human Trial of the Oral Ataxia Telangiectasia and RAD3-Related (ATR) Inhibitor BAY 1895344 in Patients with Advanced Solid Tumors.

Authors:  Timothy A Yap; David S P Tan; Angelika Terbuch; Reece Caldwell; Christina Guo; Boon Cher Goh; Valerie Heong; Noor R Md Haris; Saira Bashir; Yvette Drew; David S Hong; Funda Meric-Bernstam; Gary Wilkinson; Joseph Hreiki; Antje M Wengner; Friedhelm Bladt; Andreas Schlicker; Matthias Ludwig; Yinghui Zhou; Li Liu; Sonal Bordia; Ruth Plummer; Eleni Lagkadinou; Johann S de Bono
Journal:  Cancer Discov       Date:  2020-09-28       Impact factor: 38.272

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