Literature DB >> 29414592

Replication timing and nuclear structure.

Haiqing Fu1, Adrian Baris1, Mirit I Aladjem2.   

Abstract

DNA replication proceeds along spatially and temporally coordinated patterns within the nucleus, thus protecting the genome during the synthesis of new genetic material. While we have been able to visualize replication patterns on DNA fibers for 50 years, recent developments and discoveries have provided a greater insight into how DNA replication is controlled. In this review, we highlight many of these discoveries. Of great interest are the physiological role of the replication timing program, cis and trans-acting factors that modulate replication timing and the effects of chromatin structure on the replication timing program. We also discuss future directions in the study of replication timing. Published by Elsevier Ltd.

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Year:  2018        PMID: 29414592      PMCID: PMC5988923          DOI: 10.1016/j.ceb.2018.01.004

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  83 in total

1.  A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.

Authors:  W C Forrester; E Epner; M C Driscoll; T Enver; M Brice; T Papayannopoulou; M Groudine
Journal:  Genes Dev       Date:  1990-10       Impact factor: 11.361

2.  Telomere-binding protein Taz1 controls global replication timing through its localization near late replication origins in fission yeast.

Authors:  Atsutoshi Tazumi; Masayoshi Fukuura; Ryuichiro Nakato; Ami Kishimoto; Tomokazu Takenaka; Shiho Ogawa; Ji-Hoon Song; Tatsuro S Takahashi; Takuro Nakagawa; Katsuhiko Shirahige; Hisao Masukata
Journal:  Genes Dev       Date:  2012-09-15       Impact factor: 11.361

3.  Asynchronous DNA replication detected by fluorescence in situ hybridisation as a possible indicator of genetic damage in human lymphocytes.

Authors:  A Brás; C Z Cotrim; I Vasconcelos; J Mexia; A Léonard; I Sanzhar; N Akhmatullina; J Rueff
Journal:  Oncol Rep       Date:  2008-02       Impact factor: 3.906

4.  Human mutation rate associated with DNA replication timing.

Authors:  John A Stamatoyannopoulos; Ivan Adzhubei; Robert E Thurman; Gregory V Kryukov; Sergei M Mirkin; Shamil R Sunyaev
Journal:  Nat Genet       Date:  2009-03-15       Impact factor: 38.330

5.  Altered replication timing of the HIRA/Tuple1 locus in the DiGeorge and Velocardiofacial syndromes.

Authors:  Simona D'Antoni; Teresa Mattina; Patrizia Di Mare; Concetta Federico; Salvatore Motta; Salvatore Saccone
Journal:  Gene       Date:  2004-05-26       Impact factor: 3.688

6.  3D chromatin conformation correlates with replication timing and is conserved in resting cells.

Authors:  Benoit Moindrot; Benjamin Audit; Petra Klous; Antoine Baker; Claude Thermes; Wouter de Laat; Philippe Bouvet; Fabien Mongelard; Alain Arneodo
Journal:  Nucleic Acids Res       Date:  2012-08-08       Impact factor: 16.971

7.  Replicon clusters are stable units of chromosome structure: evidence that nuclear organization contributes to the efficient activation and propagation of S phase in human cells.

Authors:  D A Jackson; A Pombo
Journal:  J Cell Biol       Date:  1998-03-23       Impact factor: 10.539

8.  ASAR15, A cis-acting locus that controls chromosome-wide replication timing and stability of human chromosome 15.

Authors:  Nathan Donley; Leslie Smith; Mathew J Thayer
Journal:  PLoS Genet       Date:  2015-01-08       Impact factor: 5.917

9.  Mouse Rif1 is a regulatory subunit of protein phosphatase 1 (PP1).

Authors:  Rasa Sukackaite; Daniela Cornacchia; Malene Ringkjøbing Jensen; Philippe J Mas; Martin Blackledge; Elin Enervald; Guangyou Duan; Tania Auchynnikava; Maja Köhn; Darren J Hart; Sara B C Buonomo
Journal:  Sci Rep       Date:  2017-05-18       Impact factor: 4.379

10.  Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition.

Authors:  Scott A Lujan; Anders R Clausen; Alan B Clark; Heather K MacAlpine; David M MacAlpine; Ewa P Malc; Piotr A Mieczkowski; Adam B Burkholder; David C Fargo; Dmitry A Gordenin; Thomas A Kunkel
Journal:  Genome Res       Date:  2014-09-12       Impact factor: 9.043

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  13 in total

Review 1.  Regulation of the program of DNA replication by CDK: new findings and perspectives.

Authors:  Balveer Singh; Pei-Yun Jenny Wu
Journal:  Curr Genet       Date:  2018-06-20       Impact factor: 3.886

2.  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.

Authors:  Di Chen; Marzia A Cremona; Zongtai Qi; Robi D Mitra; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

3.  RecQL4 tethering on the pre-replicative complex induces unscheduled origin activation and replication stress in human cells.

Authors:  Gwangsu Shin; Dongsoo Jeong; Hyunsup Kim; Jun-Sub Im; Joon-Kyu Lee
Journal:  J Biol Chem       Date:  2019-09-13       Impact factor: 5.157

4.  Mapping Replication Timing in Single Mammalian Cells.

Authors:  Daniel A Bartlett; Vishnu Dileep; Timour Baslan; David M Gilbert
Journal:  Curr Protoc       Date:  2022-01

5.  Human DDK rescues stalled forks and counteracts checkpoint inhibition at unfired origins to complete DNA replication.

Authors:  Mathew J K Jones; Camille Gelot; Stephanie Munk; Amnon Koren; Yoshitaka Kawasoe; Kelly A George; Ruth E Santos; Jesper V Olsen; Steven A McCarroll; Mark G Frattini; Tatsuro S Takahashi; Prasad V Jallepalli
Journal:  Mol Cell       Date:  2021-02-04       Impact factor: 17.970

6.  Next-Generation Sequencing Enables Spatiotemporal Resolution of Human Centromere Replication Timing.

Authors:  Dashiell J Massey; Dongsung Kim; Kayla E Brooks; Marcus B Smolka; Amnon Koren
Journal:  Genes (Basel)       Date:  2019-04-02       Impact factor: 4.096

Review 7.  RIF1 Links Replication Timing with Fork Reactivation and DNA Double-Strand Break Repair.

Authors:  Janusz Blasiak; Joanna Szczepańska; Anna Sobczuk; Michal Fila; Elzbieta Pawlowska
Journal:  Int J Mol Sci       Date:  2021-10-23       Impact factor: 5.923

Review 8.  DNA damage repair: historical perspectives, mechanistic pathways and clinical translation for targeted cancer therapy.

Authors:  Ruixue Huang; Ping-Kun Zhou
Journal:  Signal Transduct Target Ther       Date:  2021-07-09

9.  Cohesin-Mediated Genome Architecture Does Not Define DNA Replication Timing Domains.

Authors:  Phoebe Oldach; Conrad A Nieduszynski
Journal:  Genes (Basel)       Date:  2019-03-04       Impact factor: 4.141

10.  Binding of the Treslin-MTBP Complex to Specific Regions of the Human Genome Promotes the Initiation of DNA Replication.

Authors:  Akiko Kumagai; William G Dunphy
Journal:  Cell Rep       Date:  2020-09-22       Impact factor: 9.423

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