Literature DB >> 29414265

New Molecular Diagnostic Approaches to Bacterial Infections and Antibacterial Resistance.

Ephraim L Tsalik1,2, Robert A Bonomo3,4, Vance G Fowler1,5.   

Abstract

Recent advances in the field of infectious disease diagnostics have given rise to a number of host- and pathogen-centered diagnostic approaches. Most diagnostic approaches in contemporary infectious disease focus on pathogen detection and characterization. Host-focused diagnostics have recently emerged and are based on detecting the activation of biological pathways that are highly specific to the type of infecting pathogen (e.g., viral, bacterial, protozoan, fungal). Although this progress is encouraging, it is unlikely that any single diagnostic platform will fully address the clinician's need for actionable data with short turnaround times in all settings.

Entities:  

Keywords:  gene expression profiling; host response diagnostics; host-pathogen interactions; infectious diseases diagnostics; nucleic acid biomarkers; point-of-care testing

Mesh:

Substances:

Year:  2018        PMID: 29414265      PMCID: PMC6214178          DOI: 10.1146/annurev-med-052716-030320

Source DB:  PubMed          Journal:  Annu Rev Med        ISSN: 0066-4219            Impact factor:   13.739


  60 in total

Review 1.  Computational strategies for analyzing data in gene expression microarray experiments.

Authors:  Tero Aittokallio; Markus Kurki; Olli Nevalainen; Tuomas Nikula; Anne West; Riitta Lahesmaa
Journal:  J Bioinform Comput Biol       Date:  2003-10       Impact factor: 1.122

2.  Point-Counterpoint: The FDA Has a Role in Regulation of Laboratory-Developed Tests.

Authors:  Angela M Caliendo; Kimberly E Hanson
Journal:  J Clin Microbiol       Date:  2016-01-20       Impact factor: 5.948

3.  A host-protein based assay to differentiate between bacterial and viral infections in preschool children (OPPORTUNITY): a double-blind, multicentre, validation study.

Authors:  Chantal B van Houten; Joris A H de Groot; Adi Klein; Isaac Srugo; Irena Chistyakov; Wouter de Waal; Clemens B Meijssen; Wim Avis; Tom F W Wolfs; Yael Shachor-Meyouhas; Michal Stein; Elisabeth A M Sanders; Louis J Bont
Journal:  Lancet Infect Dis       Date:  2016-12-22       Impact factor: 25.071

4.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.

Authors:  Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas R Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clelland; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason D Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jörg Hackermüller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; Piero Carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard M Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos E Antonarakis; Yutao Fu; Eric D Green; Ulaş Karaöz; Adam Siepel; James Taylor; Laura A Liefer; Kris A Wetterstrand; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory M Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Todd A Richmond; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Roland D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Gonçalo R Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George M Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong
Journal:  Nature       Date:  2007-06-14       Impact factor: 49.962

Review 5.  Democratizing systems immunology with modular transcriptional repertoire analyses.

Authors:  Damien Chaussabel; Nicole Baldwin
Journal:  Nat Rev Immunol       Date:  2014-04       Impact factor: 53.106

6.  An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis.

Authors:  Matthew P R Berry; Christine M Graham; Finlay W McNab; Zhaohui Xu; Susannah A A Bloch; Tolu Oni; Katalin A Wilkinson; Romain Banchereau; Jason Skinner; Robert J Wilkinson; Charles Quinn; Derek Blankenship; Ranju Dhawan; John J Cush; Asuncion Mejias; Octavio Ramilo; Onn M Kon; Virginia Pascual; Jacques Banchereau; Damien Chaussabel; Anne O'Garra
Journal:  Nature       Date:  2010-08-19       Impact factor: 49.962

7.  Low cost extraction and isothermal amplification of DNA for infectious diarrhea diagnosis.

Authors:  Shichu Huang; Jaephil Do; Madhumita Mahalanabis; Andy Fan; Lei Zhao; Lisa Jepeal; Satish K Singh; Catherine M Klapperich
Journal:  PLoS One       Date:  2013-03-28       Impact factor: 3.240

8.  Transcriptional blood signatures distinguish pulmonary tuberculosis, pulmonary sarcoidosis, pneumonias and lung cancers.

Authors:  Chloe I Bloom; Christine M Graham; Matthew P R Berry; Fotini Rozakeas; Paul S Redford; Yuanyuan Wang; Zhaohui Xu; Katalin A Wilkinson; Robert J Wilkinson; Yvonne Kendrick; Gilles Devouassoux; Tristan Ferry; Makoto Miyara; Diane Bouvry; Dominique Valeyre; Valeyre Dominique; Guy Gorochov; Derek Blankenship; Mitra Saadatian; Phillip Vanhems; Huw Beynon; Rama Vancheeswaran; Melissa Wickremasinghe; Damien Chaussabel; Jacques Banchereau; Virginia Pascual; Ling-Pei Ho; Marc Lipman; Anne O'Garra
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

9.  Whole blood gene expression profiles to assess pathogenesis and disease severity in infants with respiratory syncytial virus infection.

Authors:  Asuncion Mejias; Blerta Dimo; Nicolas M Suarez; Carla Garcia; M Carmen Suarez-Arrabal; Tuomas Jartti; Derek Blankenship; Alejandro Jordan-Villegas; Monica I Ardura; Zhaohui Xu; Jacques Banchereau; Damien Chaussabel; Octavio Ramilo
Journal:  PLoS Med       Date:  2013-11-12       Impact factor: 11.069

10.  Outpatient antibiotic prescribing in the United States: 2000 to 2010.

Authors:  Grace C Lee; Kelly R Reveles; Russell T Attridge; Kenneth A Lawson; Ishak A Mansi; James S Lewis; Christopher R Frei
Journal:  BMC Med       Date:  2014-06-11       Impact factor: 8.775

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  13 in total

Review 1.  Sensing the unreachable: challenges and opportunities in biofilm detection.

Authors:  Yikang Xu; Yousr Dhaouadi; Paul Stoodley; Dacheng Ren
Journal:  Curr Opin Biotechnol       Date:  2019-11-22       Impact factor: 9.740

Review 2.  Recent Advances in the Use of Molecular Methods for the Diagnosis of Bacterial Infections.

Authors:  Elisabetta Gerace; Giuseppe Mancuso; Angelina Midiri; Stefano Poidomani; Sebastiana Zummo; Carmelo Biondo
Journal:  Pathogens       Date:  2022-06-08

3.  THz-ATR Spectroscopy Integrated with Species Recognition Based on Multi-Classifier Voting for Automated Clinical Microbial Identification.

Authors:  Wenjing Yu; Jia Shi; Guorong Huang; Jie Zhou; Xinyu Zhan; Zekang Guo; Huiyan Tian; Fengxin Xie; Xiang Yang; Weiling Fu
Journal:  Biosensors (Basel)       Date:  2022-05-31

Review 4.  Laser-Induced Graphene-Functionalized Field-Effect Transistor-Based Biosensing: A Potent Candidate for COVID-19 Detection.

Authors:  Deniz Sadighbayan; Aamir Minhas-Khan; Ebrahim Ghafar-Zadeh
Journal:  IEEE Trans Nanobioscience       Date:  2022-03-31       Impact factor: 3.206

5.  Differentiation of Myositis-Induced Models of Bacterial Infection and Inflammation with T2-Weighted, CEST, and DCE-MRI.

Authors:  Joshua M Goldenberg; Alexander J Berthusen; Julio Cárdenas-Rodríguez; Mark D Pagel
Journal:  Tomography       Date:  2019-09

Review 6.  Current Trends in Diagnostics of Viral Infections of Unknown Etiology.

Authors:  Daniel Kiselev; Alina Matsvay; Ivan Abramov; Vladimir Dedkov; German Shipulin; Kamil Khafizov
Journal:  Viruses       Date:  2020-02-14       Impact factor: 5.048

Review 7.  Advances in biosensing: The CRISPR/Cas system as a new powerful tool for the detection of nucleic acids.

Authors:  Andrea Bonini; Noemi Poma; Federico Vivaldi; Arno Kirchhain; Pietro Salvo; Daria Bottai; Arianna Tavanti; Fabio Di Francesco
Journal:  J Pharm Biomed Anal       Date:  2020-09-24       Impact factor: 3.935

8.  Narrow-Spectrum Antibacterial Agents-Benefits and Challenges.

Authors:  Richard A Alm; Sushmita D Lahiri
Journal:  Antibiotics (Basel)       Date:  2020-07-17

9.  Rapid microbial identification and colistin resistance detection via MALDI-TOF MS using a novel on-target extraction of membrane lipids.

Authors:  Matthew Sorensen; Courtney E Chandler; Francesca M Gardner; Salma Ramadan; Prasanna D Khot; Lisa M Leung; Christine E Farrance; David R Goodlett; Robert K Ernst; Erik Nilsson
Journal:  Sci Rep       Date:  2020-12-09       Impact factor: 4.379

10.  Isolation, Purification, and Antimicrobial Characterization of Cannabidiolic Acid and Cannabidiol from Cannabis sativa L.

Authors:  Laura Daniela Martinenghi; Rie Jønsson; Torben Lund; Håvard Jenssen
Journal:  Biomolecules       Date:  2020-06-12
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