Literature DB >> 29410341

Evaluation of a Machine Learning-Based Prognostic Model for Unrelated Hematopoietic Cell Transplantation Donor Selection.

Ljubomir Buturovic1, Jason Shelton2, Stephen R Spellman3, Tao Wang4, Lyssa Friedman2, David Loftus2, Lyndal Hesterberg2, Todd Woodring2, Katharina Fleischhauer5, Katharine C Hsu6, Michael R Verneris7, Mike Haagenson3, Stephanie J Lee8.   

Abstract

The survival of patients undergoing hematopoietic cell transplantation (HCT) from unrelated donors for acute leukemia exhibits considerable variation, even after stringent genetic matching. To improve the donor selection process, we attempted to create an algorithm to quantify the likelihood of survival to 5 years after unrelated donor HCT for acute leukemia, based on the clinical characteristics of the donor selected. All standard clinical variables were included in the model, which also included average leukocyte telomere length of the donor based on its association with recipient survival in severe aplastic anemia, and links to multiple malignancies. We developed a multivariate classifier that assigned a Preferred or NotPreferred label to each prospective donor based on the survival of the recipient. In a previous analysis using a resampling method, recipients with donors labeled Preferred experienced clinically compelling better survival compared with those labeled NotPreferred by the test. However, in a pivotal validation study in an independent cohort of 522 patients, the overall survival of the Preferred and NotPreferred donor groups was not significantly different. Although machine learning approaches have successfully modeled other biological phenomena and have led to accurate predictive models, our attempt to predict HCT outcomes after unrelated donor transplantation was not successful.
Copyright © 2018 The American Society for Blood and Marrow Transplantation. Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Acute leukemia; Allogeneic hematopoietic cell transplantation; Donor selection; Leukocyte telomere length; Machine learning

Mesh:

Year:  2018        PMID: 29410341      PMCID: PMC5993610          DOI: 10.1016/j.bbmt.2018.01.038

Source DB:  PubMed          Journal:  Biol Blood Marrow Transplant        ISSN: 1083-8791            Impact factor:   5.742


  26 in total

Review 1.  Genomewide association studies and assessment of the risk of disease.

Authors:  Teri A Manolio
Journal:  N Engl J Med       Date:  2010-07-08       Impact factor: 91.245

2.  Association between donor leukocyte telomere length and survival after unrelated allogeneic hematopoietic cell transplantation for severe aplastic anemia.

Authors:  Shahinaz M Gadalla; Tao Wang; Michael Haagenson; Stephen R Spellman; Stephanie J Lee; Kirsten M Williams; Jason Y Wong; Immaculata De Vivo; Sharon A Savage
Journal:  JAMA       Date:  2015-02-10       Impact factor: 56.272

3.  Predicting survival from microarray data--a comparative study.

Authors:  H M Bøvelstad; S Nygård; H L Størvold; M Aldrin; Ø Borgan; A Frigessi; O C Lingjaerde
Journal:  Bioinformatics       Date:  2007-06-06       Impact factor: 6.937

4.  Haploidentical hematopoietic transplantation from KIR ligand-mismatched donors with activating KIRs reduces nonrelapse mortality.

Authors:  Antonella Mancusi; Loredana Ruggeri; Elena Urbani; Antonio Pierini; Maria Speranza Massei; Alessandra Carotti; Adelmo Terenzi; Franca Falzetti; Antonella Tosti; Fabiana Topini; Silvia Bozza; Luigina Romani; Rita Tognellini; Martin Stern; Franco Aversa; Massimo F Martelli; Andrea Velardi
Journal:  Blood       Date:  2015-03-13       Impact factor: 22.113

5.  Long telomeres and cancer risk among 95 568 individuals from the general population.

Authors:  Line Rode; Børge G Nordestgaard; Stig E Bojesen
Journal:  Int J Epidemiol       Date:  2016-08-06       Impact factor: 7.196

6.  Effect of T-cell-epitope matching at HLA-DPB1 in recipients of unrelated-donor haemopoietic-cell transplantation: a retrospective study.

Authors:  Katharina Fleischhauer; Bronwen E Shaw; Theodore Gooley; Mari Malkki; Peter Bardy; Jean-Denis Bignon; Valérie Dubois; Mary M Horowitz; J Alejandro Madrigal; Yasuo Morishima; Machteld Oudshoorn; Olle Ringden; Stephen Spellman; Andrea Velardi; Elisabetta Zino; Effie W Petersdorf
Journal:  Lancet Oncol       Date:  2012-02-15       Impact factor: 41.316

7.  Donor characteristics as risk factors in recipients after transplantation of bone marrow from unrelated donors: the effect of donor age.

Authors:  C Kollman; C W Howe; C Anasetti; J H Antin; S M Davies; A H Filipovich; J Hegland; N Kamani; N A Kernan; R King; V Ratanatharathorn; D Weisdorf; D L Confer
Journal:  Blood       Date:  2001-10-01       Impact factor: 22.113

8.  Effect of donor KIR2DL1 allelic polymorphism on the outcome of pediatric allogeneic hematopoietic stem-cell transplantation.

Authors:  Rafijul Bari; Piya Rujkijyanont; Erin Sullivan; Guolian Kang; Victoria Turner; Kwan Gan; Wing Leung
Journal:  J Clin Oncol       Date:  2013-09-16       Impact factor: 44.544

9.  Nonpermissive HLA-DPB1 mismatch increases mortality after myeloablative unrelated allogeneic hematopoietic cell transplantation.

Authors:  Joseph Pidala; Stephanie J Lee; Kwang Woo Ahn; Stephen Spellman; Hai-Lin Wang; Mahmoud Aljurf; Medhat Askar; Jason Dehn; Marcelo Fernandez Viña; Alois Gratwohl; Vikas Gupta; Rabi Hanna; Mary M Horowitz; Carolyn K Hurley; Yoshihiro Inamoto; Adetola A Kassim; Taiga Nishihori; Carlheinz Mueller; Machteld Oudshoorn; Effie W Petersdorf; Vinod Prasad; James Robinson; Wael Saber; Kirk R Schultz; Bronwen Shaw; Jan Storek; William A Wood; Ann E Woolfrey; Claudio Anasetti
Journal:  Blood       Date:  2014-08-26       Impact factor: 22.113

10.  Cross-validation pitfalls when selecting and assessing regression and classification models.

Authors:  Damjan Krstajic; Ljubomir J Buturovic; David E Leahy; Simon Thomas
Journal:  J Cheminform       Date:  2014-03-29       Impact factor: 5.514

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  5 in total

Review 1.  Artificial Intelligence Approaches in Hematopoietic Cell Transplantation: A Review of the Current Status and Future Directions

Authors:  Ibrahim N. Muhsen; Tusneem ElHassan; Shahrukh K Hashmi
Journal:  Turk J Haematol       Date:  2018-06-08       Impact factor: 1.831

Review 2.  "Worldwide Network for Blood & Marrow Transplantation (WBMT) special article, challenges facing emerging alternate donor registries".

Authors:  Mahmoud Aljurf; Daniel Weisdorf; Feras Alfraih; Jeff Szer; Carlheinz Müller; Dennis Confer; Shahrukh Hashmi; Nicolaus Kröger; Bronwen E Shaw; Hildegard Greinix; Mohamed A Kharfan-Dabaja; Lydia Foeken; Adriana Seber; Syed Ahmed; Areej El-Jawahri; Moheeb Al-Awwami; Yoshiko Atsuta; Marcelo Pasquini; Amr Hanbali; Hazzaa Alzahrani; Shinichiro Okamoto; Eliane Gluckman; Mohamad Mohty; Yoshihisa Kodera; Mary Horowitz; Dietger Niederwieser; Riad El Fakih
Journal:  Bone Marrow Transplant       Date:  2019-02-18       Impact factor: 5.483

3.  Establishment of a predictive model for GVHD-free, relapse-free survival after allogeneic HSCT using ensemble learning.

Authors:  Makoto Iwasaki; Junya Kanda; Yasuyuki Arai; Tadakazu Kondo; Takayuki Ishikawa; Yasunori Ueda; Kazunori Imada; Takashi Akasaka; Akihito Yonezawa; Kazuhiro Yago; Masaharu Nohgawa; Naoyuki Anzai; Toshinori Moriguchi; Toshiyuki Kitano; Mitsuru Itoh; Nobuyoshi Arima; Tomoharu Takeoka; Mitsumasa Watanabe; Hirokazu Hirata; Kosuke Asagoe; Isao Miyatsuka; Le My An; Masanori Miyanishi; Akifumi Takaori-Kondo
Journal:  Blood Adv       Date:  2022-04-26

4.  Survival Prediction of Children Undergoing Hematopoietic Stem Cell Transplantation Using Different Machine Learning Classifiers by Performing Chi-Square Test and Hyperparameter Optimization: A Retrospective Analysis.

Authors:  Ishrak Jahan Ratul; Ummay Habiba Wani; Mirza Muntasir Nishat; Abdullah Al-Monsur; Abrar Mohammad Ar-Rafi; Fahim Faisal; Mohammad Ridwan Kabir
Journal:  Comput Math Methods Med       Date:  2022-09-25       Impact factor: 2.809

Review 5.  A Systematic Review of Machine Learning Techniques in Hematopoietic Stem Cell Transplantation (HSCT).

Authors:  Vibhuti Gupta; Thomas M Braun; Mosharaf Chowdhury; Muneesh Tewari; Sung Won Choi
Journal:  Sensors (Basel)       Date:  2020-10-27       Impact factor: 3.576

  5 in total

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