Literature DB >> 29410015

Quack: A quality assurance tool for high throughput sequence data.

Adam Thrash1, Mark Arick1, Daniel G Peterson2.   

Abstract

The quality of data generated by high-throughput DNA sequencing tools must be rapidly assessed in order to determine how useful the data may be in making biological discoveries; higher quality data leads to more confident results and conclusions. Due to the ever-increasing size of data sets and the importance of rapid quality assessment, tools that analyze sequencing data should quickly produce easily interpretable graphics. Quack addresses these issues by generating information-dense visualizations from FASTQ files at a speed far surpassing other publicly available quality assurance tools in a manner independent of sequencing technology.
Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

Keywords:  DNA; FASTQ; Quality assurance; Quality check; Visualization

Mesh:

Year:  2018        PMID: 29410015     DOI: 10.1016/j.ab.2018.01.028

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  7 in total

1.  Age-related accumulation of de novo mitochondrial mutations in mammalian oocytes and somatic tissues.

Authors:  Barbara Arbeithuber; James Hester; Marzia A Cremona; Nicholas Stoler; Arslan Zaidi; Bonnie Higgins; Kate Anthony; Francesca Chiaromonte; Francisco J Diaz; Kateryna D Makova
Journal:  PLoS Biol       Date:  2020-07-15       Impact factor: 8.029

2.  Characterization of the self-targeting Type IV CRISPR interference system in Pseudomonas oleovorans.

Authors:  Xiaohan Guo; Mariana Sanchez-Londono; José Vicente Gomes-Filho; Rogelio Hernandez-Tamayo; Selina Rust; Leah M Immelmann; Pascal Schäfer; Julia Wiegel; Peter L Graumann; Lennart Randau
Journal:  Nat Microbiol       Date:  2022-09-29       Impact factor: 30.964

3.  Carotenoid Biosynthesis: Genome-Wide Profiling, Pathway Identification in Rhodotorula glutinis X-20, and High-Level Production.

Authors:  Shaobo Bo; Xiaoxia Ni; Jintang Guo; Zhengyang Liu; Xiaoya Wang; Yue Sheng; Genlin Zhang; Jinfeng Yang
Journal:  Front Nutr       Date:  2022-06-17

4.  Perinatal Exposure to Nicotine Alters Sperm RNA Profiles in Rats.

Authors:  Hetan Wang; Jie Liu; Jianjun Gao; Wei Yan; Virender K Rehan
Journal:  Front Endocrinol (Lausanne)       Date:  2022-05-04       Impact factor: 6.055

5.  Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia.

Authors:  Jan-Niklas Macher; Martina Prazeres; Sarah Taudien; Jamaluddin Jompa; Aleksey Sadekov; Willem Renema
Journal:  PLoS One       Date:  2021-01-04       Impact factor: 3.240

6.  Male fathead minnow transcriptomes and associated chemical analytes in the Milwaukee estuary system.

Authors:  Natàlia Garcia-Reyero; Mark A Arick; E Alice Woolard; Mitchell Wilbanks; John E Mylroie; Kathleen Jensen; Michael Kahl; David Feifarek; Shane Poole; Eric Randolph; Jenna Cavallin; Brett R Blackwell; Daniel Villeneuve; Gerald T Ankley; Edward J Perkins
Journal:  Sci Data       Date:  2022-08-04       Impact factor: 8.501

7.  Pronounced somatic bottleneck in mitochondrial DNA of human hair.

Authors:  Alison Barrett; Barbara Arbeithuber; Arslan Zaidi; Peter Wilton; Ian M Paul; Rasmus Nielsen; Kateryna D Makova
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2019-12-02       Impact factor: 6.237

  7 in total

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