Literature DB >> 29405647

Deep Generative Models for Molecular Science.

Peter B Jørgensen1, Mikkel N Schmidt1, Ole Winther1.   

Abstract

Generative deep machine learning models now rival traditional quantum-mechanical computations in predicting properties of new structures, and they come with a significantly lower computational cost, opening new avenues in computational molecular science. In the last few years, a variety of deep generative models have been proposed for modeling molecules, which differ in both their model structure and choice of input features. We review these recent advances within deep generative models for predicting molecular properties, with particular focus on models based on the probabilistic autoencoder (or variational autoencoder, VAE) approach in which the molecular structure is embedded in a latent vector space from which its properties can be predicted and its structure can be restored.
© 2018 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Keywords:  deep learning; generative modeling; molecular science; variational auto-encoders; variational inference

Mesh:

Year:  2018        PMID: 29405647     DOI: 10.1002/minf.201700133

Source DB:  PubMed          Journal:  Mol Inform        ISSN: 1868-1743            Impact factor:   3.353


  5 in total

Review 1.  Deep Learning for Deep Chemistry: Optimizing the Prediction of Chemical Patterns.

Authors:  Tânia F G G Cova; Alberto A C C Pais
Journal:  Front Chem       Date:  2019-11-26       Impact factor: 5.221

2.  Transmol: repurposing a language model for molecular generation.

Authors:  Rustam Zhumagambetov; Ferdinand Molnár; Vsevolod A Peshkov; Siamac Fazli
Journal:  RSC Adv       Date:  2021-07-27       Impact factor: 4.036

3.  Polygrammar: Grammar for Digital Polymer Representation and Generation.

Authors:  Minghao Guo; Wan Shou; Liane Makatura; Timothy Erps; Michael Foshey; Wojciech Matusik
Journal:  Adv Sci (Weinh)       Date:  2022-06-09       Impact factor: 17.521

Review 4.  Artificial Intelligence in Drug Design.

Authors:  Gerhard Hessler; Karl-Heinz Baringhaus
Journal:  Molecules       Date:  2018-10-02       Impact factor: 4.411

5.  VAE-Sim: A Novel Molecular Similarity Measure Based on a Variational Autoencoder.

Authors:  Soumitra Samanta; Steve O'Hagan; Neil Swainston; Timothy J Roberts; Douglas B Kell
Journal:  Molecules       Date:  2020-07-29       Impact factor: 4.411

  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.