| Literature DB >> 29403527 |
Raquel B Ariede1, Milena V Freitas1, Milene E Hata1, Vito A Mastrochirico-Filho1, Fabiana Pilarski1, Sergio R Batlouni1, Fábio Porto-Foresti2, Diogo T Hashimoto1.
Abstract
Tambaqui, Colossoma macropomum, is the main native fish species produced in Brazil, and is an important species for genetic improvement in aquaculture. In addition, breeding studies on this species can be optimized with the use of molecular markers associated with productive phenotypes. The objective of the present study was to test the performance of growth traits and resistance to the bacteria, Aeromonas hydrophila, in association with microsatellite markers in C. macropomum. In this study, three full-sib families were subjected to bacterial challenge and morphometric growth assessments. Tambaqui families subjected to the bacterial challenge differed significantly in death time and mortality rate. There was, however, no association between resistance to bacteria and microsatellite markers. In relation to growth traits, we observed a marker/phenotype association in two microsatellites. The marker in the 6b isoform x5 gene (TNCRC6b) was associated with length, whereas an anonymous marker was associated with height. The present study highlighted the evaluation of molecular markers associated with growth traits, and can serve as the basis for future marker-assisted selection (MAS) of tambaqui.Entities:
Keywords: MAS; QTL; animal improvement; aquaculture; bacterial challenge
Year: 2018 PMID: 29403527 PMCID: PMC5778134 DOI: 10.3389/fgene.2018.00003
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Figure 1Traits evaluated in the bacterial challenge (death time and mortality rate) indicating significant differences between the tambaqui families.
Analysis of growth performance in three families of tambaqui Colossoma macropomum, including average values and standard deviation for weight and morphometric measures.
| 1 | 44.5 ± 12.7 | 38.0 ± 4.9 | 34.5 ± 4.0 | 105.6 ± 11.3 | 55.4 ± 5.8 | 32.6 ± 4.7 |
| 2 | 39.8 ± 8.0 | 38.5 ± 4.8 | 35.2 ± 3.9 | 104.3 ± 18.0 | 55.6 ± 10.1 | 32.2 ± 4.1 |
| 3 | 31.7 ± 10.7 | 35.4 ± 4.6 | 31.1 ± 3.4 | 96.4 ± 8.2 | 47.4 ± 4.4 | 28.5 ± 3.0 |
BW, body weight (g); HL, head length (mm); HH, head height (mm); SL, standard length (mm); H1, height from the beginning of the dorsal fin to the beginning of the ventral fin (mm); H2, height from the end of the dorsal fin to the beginning of the anal fin (mm).
Analysis of Pearson correlation (r) between growth traits (weight and five morphometric measures) in three families of tambaqui Colossoma macropomum.
| HL | 0.71 | ||||
| HH | 0.70 | 0.94 | |||
| SL | 0.73 | 0.84 | 0.83 | ||
| H1 | 0.62 | 0.58 | 0.62 | 0.37 | |
| H2 | 0.73 | 0.66 | 0.70 | 0.73 | 0.68 |
All values represented significant correlations (p < 0.05). BW, body weight (g); HL, head length (mm); HH, head height (mm); SL, standard length (mm); H1, height from the beginning of the dorsal fin to the beginning of the ventral fin (mm); H2, height from the end of the dorsal fin to the beginning of the anal fin (mm).
Characterization of heterozygous microsatellites in at least one of the progenitors in three families of tambaqui Colossoma macropomum.
| 1 | c5837 | 174/179 | 174/174 |
| c2311 | 163/169 | 166/175 | |
| c3818 | 204/214 | 204/210 | |
| c3592 | 166/170 | 170/170 | |
| c4296 | 118/122 | 118/118 | |
| 2 | c3842 | 183/186 | 183/183 |
| 3 | c4604 | 142/151 | 148/151 |
| c3842 | 183/186 | 183/186 | |
| r1366 | 261/277 | 261/277 | |
| r912 | 175/175 | 175/185 |
Genotypes are represented by allele size in base pairs (bp).
Analysis of the microsatellite loci in the progeny and average values of growth traits (weight and five morphometric measures) by clustering individuals according to the respective genotype in three families of tambaqui Colossoma macropomum.
| 1 | c5837 | 174/174 | 0.34 | 42.55 | 37.61 | 34.61 | 104.80 | 53.60 | 34.15 |
| 174/179 | 0.66 | 42.52 | 38.17 | 34.44 | 106.07 | 53.27 | 31.92 | ||
| c2311 | 163/166 | 0.25 | 36.50 | 36.07 | 32.96 | 101.72 | 51.14 | 30.39 | |
| 163/175 | 0.40 | 45.08 | 38.94 | 35.45 | 107.49 | 54.44 | 33.92 | ||
| 166/169 | 0.19 | 41.67 | 37.26 | 33.49 | 105.26 | 53.37 | 32.32 | ||
| 169/175 | 0.16 | 46.60 | 39.37 | 35.67 | 107.51 | 54.25 | 33.61 | ||
| c3818 | 204/204 | 0.24 | 39.29 | 37.61 | 34.01 | 102.54 | 51.52 | 30.41 | |
| 204/210 | 0.34 | 37.40 | 36.74 | 33.67 | 101.44 | 50.86 | 32.17 | ||
| 204/214 | 0.18 | 43.75 | 36.88 | 34.10 | 106.19 | 54.52 | 32.77 | ||
| 210/214 | 0.24 | 51.71 | 41.36 | 36.62 | 114.07 | 57.56 | 35.60 | ||
| c3592 | 166/170 | 0.59 | 42.47 | 37.28 | 34.18 | 104.84 | 53.06 | 32.24 | |
| 170/170 | 0.41 | 42.62 | 38.99 | 34.96 | 106.78 | 53.85 | 33.34 | ||
| c4296 | 118/118 | 0.62 | 43.60 | 38.30 | 34.83 | 106.20 | 53.49 | 32.60 | |
| 118/122 | 0.38 | 40.75 | 37.45 | 33.94 | 104.68 | 53.21 | 32.82 | ||
| 2 | c3842 | 183/183 | 0.47 | 45.29 | 39.94 | 36.18 | 111.56 | 55.15 | 32.71 |
| 183/186 | 0.53 | 36.50 | 38.13 | 34.81 | 98.33 | 54.42 | 32.38 | ||
| 3 | c4604 | 142/148 | 0.47 | 32.53 | 35.05 | 30.75 | 97.50 | 48.38 | 29.69 |
| 142/151 | 0.22 | 30.43 | 34.67 | 31.30 | 95.06 | 46.04 | 27.09 | ||
| 148/151 | 0.06 | 24.50 | 34.07 | 28.40 | 91.31 | 44.29 | 26.92 | ||
| 151/151 | 0.25 | 32.88 | 36.92 | 32.22 | 96.39 | 47.16 | 27.81 | ||
| c3842 | 183/183 | 0.03 | 34.00 | 35.74 | 30.19 | 86.76 | 42.95 | 24.28 | |
| 183/186 | 0.56 | 30.72 | 35.60 | 31.41 | 96.13 | 47.79 | 28.94 | ||
| 186/186 | 0.41 | 32.77 | 35.03 | 30.72 | 97.29 | 46.98 | 28.17 | ||
| r1366 | 261/261 | 0.06 | 29.00 | 32.21 | 29.85 | 94.11 | 46.71 | 27.93 | |
| 261/277 | 0.66 | 32.71 | 36.30 | 31.41 | 97.30 | 47.77 | 28.84 | ||
| 277/277 | 0.28 | 29.78 | 33.91 | 30.62 | 94.47 | 46.35 | 27.76 | ||
| r912 | 175/175 | 0.53 | 30.35 | 34.18 | 31.02 | 94.41 | 46.29 | 27.44 | |
| 175/185 | 0.47 | 33.13 | 36.72 | 31.16 | 98.46 | 48.46 | 29.65 |
Genotypes are represented by allele size in base pairs (bp). BW, body weight (g); HL, head length (mm); HH, head height (mm); SL, standard length (mm); H1, height from the beginning of the dorsal fin to the beginning of the ventral fin (mm); H2, height from the end of the dorsal fin to the beginning of the anal fin (mm).
Markers that did not follow the Mendelian segregation pattern (p < 0.01).